The Neolithic revolution of bacterial genomes

被引:66
作者
Mira, Alex [1 ]
Pushker, Ravindra [1 ]
Rodriguez-Valera, Francisco [1 ]
机构
[1] Univ Miguel Hernandez, Div Microbiol, Evolutionary Genom Grp, Alicante 03550, Spain
关键词
D O I
10.1016/j.tim.2006.03.001
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Current human activities undoubtedly impact natural ecosystems. However, the influence of Homo sapiens on living organisms must have also occurred in the past. Certain genomic characteristics of prokaryotes can be used to study the impact of ancient human activities on microorganisms. By analyzing DNA sequence similarity features of transposable elements, dramatic genomic changes have been identified in bacteria that are associated with large and stable human communities, agriculture and animal domestication: three features unequivocally linked to the Neolithic revolution. It is hypothesized that bacteria specialized in human-associated niches underwent an intense transformation after the social and demographic changes that took place with the first Neolithic settlements. These genomic changes are absent in related species that are not specialized in humans.
引用
收藏
页码:200 / 206
页数:7
相关论文
共 42 条
[1]   Homologous recombination between the tuf genes of Salmonella typhimurium [J].
Abdulkarim, F ;
Hughes, D .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 260 (04) :506-522
[2]   Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis [J].
Achtman, M ;
Zurth, K ;
Morelli, C ;
Torrea, G ;
Guiyoule, A ;
Carniel, E .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (24) :14043-14048
[3]   Microevolution and history of the plague bacillus, Yersinia pestis [J].
Achtman, M ;
Morelli, G ;
Zhu, PX ;
Wirth, T ;
Diehl, I ;
Kusecek, B ;
Vogler, AJ ;
Wagner, DM ;
Allender, CJ ;
Easterday, WR ;
Chenal-Francisque, V ;
Worsham, P ;
Thomson, NR ;
Parkhill, J ;
Lindler, LE ;
Carniel, E ;
Keim, P .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (51) :17837-17842
[4]  
ALIBASOGLU M, 1986, BERL MUNCH TIERARZTL, V99, P57
[5]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[6]   Insights into the evolutionary process of genome degradation [J].
Andersson, JO ;
Andersson, SGE .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 1999, 9 (06) :664-671
[7]   Paleoanthropological traces of a neolithic demographic transition [J].
Bocquet-Appel, JP .
CURRENT ANTHROPOLOGY, 2002, 43 (04) :637-650
[8]   The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp lactis IL1403 [J].
Bolotin, A ;
Wincker, P ;
Mauger, S ;
Jaillon, O ;
Malarme, K ;
Weissenbach, J ;
Ehrlich, SD ;
Sorokin, A .
GENOME RESEARCH, 2001, 11 (05) :731-753
[9]  
BROWN SM, 2000, BIOINFORMATICS, P57
[10]   The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000 [J].
Buell, CR ;
Joardar, V ;
Lindeberg, M ;
Selengut, J ;
Paulsen, IT ;
Gwinn, ML ;
Dodson, RJ ;
Deboy, RT ;
Durkin, AS ;
Kolonay, JF ;
Madupu, R ;
Daugherty, S ;
Brinkac, L ;
Beanan, MJ ;
Haft, DH ;
Nelson, WC ;
Davidsen, T ;
Zafar, N ;
Zhou, LW ;
Liu, J ;
Yuan, QP ;
Khouri, H ;
Fedorova, N ;
Tran, B ;
Russell, D ;
Berry, K ;
Utterback, T ;
Van Aken, SE ;
Feldblyum, TV ;
D'Ascenzo, M ;
Deng, WL ;
Ramos, AR ;
Alfano, JR ;
Cartinhour, S ;
Chatterjee, AK ;
Delaney, TP ;
Lazarowitz, SG ;
Martin, GB ;
Schneider, DJ ;
Tang, XY ;
Bender, CL ;
White, O ;
Fraser, CM ;
Collmer, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (18) :10181-10186