RNAbrowse: RNA-Seq De Novo Assembly Results Browser

被引：19

作者：

Mariette, Jerome ^{[1
]}

Noirot, Celine ^{[1
]}

Nabihoudine, Ibounyamine ^{[1
]}

Bardou, Philippe ^{[2
]}

Hoede, Claire ^{[1
]}

Djari, Anis ^{[2
]}

Cabau, Cedric ^{[2
]}

Klopp, Christophe ^{[1
,2
]}

机构：

[1] INRA, Plate Forme Bioinfo Genotoul, Biometrie & Intelligence Artificielle, F-31326 Castanet Tolosan, France

[2] INRA, Plate Forme SIGENAE Genet Cellulaire, F-31326 Castanet Tolosan, France

来源：

PLOS ONE | 2014年 / 9卷 / 05期

关键词：

D O I：

10.1371/journal.pone.0096821

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse. This article presents a user oriented storage and visualisation environment permitting to explore the data in a top-down manner, going from general graphical views to all possible details. The software package is based on biomart, easy to install and populate with local data. The software package is available under the GNU General Public License (GPL) at http://bioinfo.genotoul.fr/RNAbrowse.

引用

页数：7

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