Nyquist interpolation improves neuron yield in multiunit recordings

被引:25
作者
Blanche, Timothy J. [1 ]
Swindale, Nicholas V. [1 ]
机构
[1] Univ British Columbia, Dept Ophthalmol & Visual Sci, Vancouver, BC V5Z 1M9, Canada
基金
加拿大自然科学与工程研究理事会; 加拿大健康研究院;
关键词
extracellular single-unit recording; signal processing; waveform reconstruction; interpolation; Nyquist criteria; sampling theorem; clustering; tutorial;
D O I
10.1016/j.jneumeth.2005.12.031
中图分类号
Q5 [生物化学];
学科分类号
071010 [生物化学与分子生物学]; 081704 [应用化学];
摘要
Multiunit electrodes, in particular tetrodes and polytrodes, are able to isolate action potentials from many neurons simultaneously. However, inaccuracies in the post-acquisition reconstruction of recorded spike waveforms can affect the reliability of spike detection and sorting. Here we show that bandlimited interpolation with sample-and-hold delay correction reduces waveform variability, leading to improved reliability of threshold-based event detection and improved spike sorting accuracy. Interpolation of continuously acquired data is, however, computationally expensive. A cost-benefit analysis was made of varying sampling rates from 12.5 kHz (no interpolation) to 100 kHz (eight times oversampling, with respect to the Nyquist frequency), taking into consideration the final application of the data. For most purposes, including spike sorting, sample rates below 25 kHz with bandlimited interpolation to 50 kHz were ideal, with negligible gains above this rate. A practical benefit, especially for large electrode arrays, is that the bandwidth and storage requirements can be greatly reduced by using data acquisition rates at or slightly above the Nyquist frequency. (c) 2006 Published by Elsevier B.V.
引用
收藏
页码:81 / 91
页数:11
相关论文
共 35 条
[1]
MULTI-SPIKE TRAIN ANALYSIS [J].
ABELES, M ;
GOLDSTEIN, MH .
PROCEEDINGS OF THE IEEE, 1977, 65 (05) :762-773
[2]
RECOGNITION OF MULTIUNIT NEURAL SIGNALS [J].
ATIYA, AF .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 1992, 39 (07) :723-729
[3]
A high-yield microassembly structure for three-dimensional microelectrode arrays [J].
Bai, Q ;
Wise, KD ;
Anderson, DJ .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2000, 47 (03) :281-289
[4]
Characterization of neocortical principal cells and Interneurons by network interactions and extracellular features [J].
Barthó, P ;
Hirase, H ;
Monconduit, L ;
Zugaro, M ;
Harris, KD ;
Buzsáki, G .
JOURNAL OF NEUROPHYSIOLOGY, 2004, 92 (01) :600-608
[5]
Polytrodes: High-density silicon electrode arrays for large-scale multiunit recording [J].
Blanche, TJ ;
Spacek, MA ;
Hetke, JF ;
Swindale, NV .
JOURNAL OF NEUROPHYSIOLOGY, 2005, 93 (05) :2987-3000
[6]
BLANCHE TJ, 2003, P 32 ANN M SOC NEUR
[7]
Precise inhibition is essential for microsecond interaural time difference coding [J].
Brand, A ;
Behrend, O ;
Marquardt, T ;
McAlpine, D ;
Grothe, B .
NATURE, 2002, 417 (6888) :543-547
[8]
A SILICON-BASED, 3-DIMENSIONAL NEURAL INTERFACE - MANUFACTURING PROCESSES FOR AN INTRACORTICAL ELECTRODE ARRAY [J].
CAMPBELL, PK ;
JONES, KE ;
HUBER, RJ ;
HORCH, KW ;
NORMANN, RA .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 1991, 38 (08) :758-768
[9]
Detection, classification, and superposition resolution of action potentials in multiunit single-channel recordings by an on-line real-time neural network [J].
Chandra, R ;
Optican, LM .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 1997, 44 (05) :403-412
[10]
Massively parallel recording of unit and local field potentials with silicon-based electrodes [J].
Csicsvari, J ;
Henze, DA ;
Jamieson, B ;
Harris, KD ;
Sirota, A ;
Barthó, P ;
Wise, KD ;
Buzsáki, G .
JOURNAL OF NEUROPHYSIOLOGY, 2003, 90 (02) :1314-1323