TRANSFAC, TRRD and COMPEL: Towards a federated database system on transcriptional regulation

被引:129
作者
Wingender, E [1 ]
Kel, AE [1 ]
Kel, OV [1 ]
Karas, H [1 ]
Heinemeyer, T [1 ]
Dietze, P [1 ]
Knuppel, R [1 ]
Romaschenko, AG [1 ]
Kolchanov, NA [1 ]
机构
[1] RUSSIAN ACAD SCI,INST CYTOL & GENET,NOVOSIBIRSK 630090,RUSSIA
关键词
D O I
10.1093/nar/25.1.265
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Three databases that provide data on transcriptional regulation are described. TRANSFAC is a database on transcription factors and their DNA binding sites. TRRD (Transcription Regulatory Region Database) collects information about complete regulatory regions, their regulation properties and architecture. COMPEL comprises specific information on composite regulatory elements. Here, we describe the present status of these databases and the first steps towards their federation.
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页码:265 / 268
页数:4
相关论文
共 17 条
  • [1] Bode J, 1995, INT REV CYTOL, V162A, P389
  • [2] COMPILATION AND ANALYSIS OF EUKARYOTIC POL-II PROMOTER SEQUENCES
    BUCHER, P
    TRIFONOV, EN
    [J]. NUCLEIC ACIDS RESEARCH, 1986, 14 (24) : 10009 - 10026
  • [3] A COMPILATION OF COMPOSITE REGULATORY ELEMENTS AFFECTING GENE-TRANSCRIPTION IN VERTEBRATES
    KEL, OV
    ROMASCHENKO, AG
    KEL, AE
    WINGENDER, E
    KOLCHANOV, NA
    [J]. NUCLEIC ACIDS RESEARCH, 1995, 23 (20) : 4097 - 4103
  • [4] KEL OV, 1995, BIOTECHNOLOGY COMPUT, V5, P42
  • [5] Knuppel R, 1994, J Comput Biol, V1, P191, DOI 10.1089/cmb.1994.1.191
  • [6] COOPERATIVITY BETWEEN 2 NF-KAPPA-B COMPLEXES, MEDIATED BY HIGH-MOBILITY-GROUP PROTEIN-I(Y), IS ESSENTIAL FOR CYTOKINE-INDUCED EXPRESSION OF THE E-SELECTIN PROMOTER
    LEWIS, H
    KASZUBSKA, W
    DELAMARTER, JF
    WHELAN, J
    [J]. MOLECULAR AND CELLULAR BIOLOGY, 1994, 14 (09) : 5701 - 5709
  • [7] McKnight S., 1992, TRANSCRIPTIONAL REGU
  • [8] A REGULATORY ELEMENT THAT MEDIATES COOPERATION BETWEEN A PEA3-AP-1 ELEMENT AND AN AP-1 SITE IS REQUIRED FOR PHORBOL ESTER INDUCTION OF UROKINASE ENHANCER ACTIVITY IN HEPG2 HEPATOMA-CELLS
    NERLOV, C
    DECESARE, D
    PERGOLA, F
    CARACCIOLO, A
    BLASI, F
    JOHNSEN, M
    VERDE, P
    [J]. EMBO JOURNAL, 1992, 11 (12) : 4573 - 4582
  • [9] MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
    Quandt, K
    Frech, K
    Karas, H
    Wingender, E
    Werner, T
    [J]. NUCLEIC ACIDS RESEARCH, 1995, 23 (23) : 4878 - 4884
  • [10] THE HIGH MOBILITY GROUP PROTEIN HMG-I(Y) IS REQUIRED FOR NF-KAPPA-B-DEPENDENT VIRUS INDUCTION OF THE HUMAN IFN-BETA GENE
    THANOS, D
    MANIATIS, T
    [J]. CELL, 1992, 71 (05) : 777 - 789