QM/MM determination of kinetic isotope effects for COMT-catalyzed methyl transfer does not support compression hypothesis

被引:48
作者
Ruggiero, GD
Williams, IH [1 ]
Roca, M
Moliner, V
Tuñón, I
机构
[1] Univ Bath, Dept Chem, Bath BA2 7AY, Avon, England
[2] Univ Jaume 1, Dept Ciencias Expt, Castellon de La Plana 12080, Spain
[3] Univ Valencia, Dept Quim Fis, Burjassot 46100, Spain
关键词
D O I
10.1021/ja048055e
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Secondary α-D3 kinetic isotope effects calculated by the hybrid AM1/TIP3P/CHARMM method for the reaction of S-adenosylmethionine with catecholate anion in aqueous solution and catalyzed by rat liver catechol O-methyltransferase at 298 K are 0.94 and 0.85, respectively, in good accord with experiment. The large inverse effect for the enzymatic reaction is not due to compression but arises from significant increases in the stretching and bending force constants involving the isotopically substituted atoms of the transferring methyl group as between the reactant complex and the transition structure, larger than for the reaction in water. Copyright © 2004 American Chemical Society.
引用
收藏
页码:8634 / 8635
页数:2
相关论文
共 19 条
[1]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[2]   THE DEVELOPMENT AND USE OF QUANTUM-MECHANICAL MOLECULAR-MODELS .76. AM1 - A NEW GENERAL-PURPOSE QUANTUM-MECHANICAL MOLECULAR-MODEL [J].
DEWAR, MJS ;
ZOEBISCH, EG ;
HEALY, EF ;
STEWART, JJP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1985, 107 (13) :3902-3909
[3]   Transition state looseness and alpha-secondary kinetic isotope effects [J].
Glad, SS ;
Jensen, F .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (01) :227-232
[4]   ALPHA-DEUTERIUM AND C-13 ISOTOPE EFFECTS FOR A SIMPLE, INTER-MOLECULAR SULFUR-TO-OXYGEN METHYL-TRANSFER REACTION - TRANSITION-STATE STRUCTURES AND ISOTOPE EFFECTS IN TRANSMETHYLATION AND TRANSALKYLATION [J].
GRAY, CH ;
COWARD, JK ;
SCHOWEN, KB ;
SCHOWEN, RL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1979, 101 (15) :4351-4358
[5]   ALPHA-DEUTERIUM AND C-13 ISOTOPE EFFECTS FOR METHYL TRANSFER CATALYZED BY CATECHOL O-METHYLTRANSFERASE - SN2-LIKE TRANSITION-STATE [J].
HEGAZI, MF ;
BORCHARDT, RT ;
SCHOWEN, RL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1979, 101 (15) :4359-4365
[6]   COMPARISON OF SIMPLE POTENTIAL FUNCTIONS FOR SIMULATING LIQUID WATER [J].
JORGENSEN, WL ;
CHANDRASEKHAR, J ;
MADURA, JD ;
IMPEY, RW ;
KLEIN, ML .
JOURNAL OF CHEMICAL PHYSICS, 1983, 79 (02) :926-935
[7]  
Männistö PT, 1999, PHARMACOL REV, V51, P593
[8]   Influence of compression upon kinetic isotope effects for SN2 methyl transfer:: A computational reappraisal [J].
Moliner, V ;
Williams, IH .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (44) :10895-10902
[9]  
MOLINER V, 1997, J CHEM SOC CHEM COMM, V14, P1271
[10]  
OLSEN J, 1979, TRANSMETHYLATION