Self-assembly of a phospholipid Langmuir monolayer using coarse-grained molecular dynamics simulations

被引:37
作者
Lopez, CF
Nielsen, SO
Moore, PB
Shelley, JC
Klein, ML
机构
[1] Univ Penn, Ctr Mol Modeling, Philadelphia, PA 19104 USA
[2] Univ Penn, Dept Chem, Philadelphia, PA 19104 USA
[3] Schrodinger Inc, Portland, OR 97201 USA
关键词
D O I
10.1088/0953-8984/14/40/327
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
Molecular dynamics simulations using a coarse-grained (CG) model for dimyristoyl-phosphatidyl-choline and water molecules have been carried out to follow the self-assembly process of a Langmuir monolayer. We expand on a previous study of the characteristics of the CG model where we compare the rotational and translational constants of the present model to those of an all-atom (AA) model, and find that the rotational and translational timescales are up to two orders of magnitude faster than in an AA model. We then apply the model to the self-assembly of a Langmuir monolayer. The initial randomly distributed system, which consists of 80 lipids and 5000 water sites, quickly self-assembles into two Langmuir monolayers and a micelle in the bulk water region. The micelle slowly diffuses towards and fuses with one of the interfacial monolayers, leaving the final equilibrated state with a Langmuir monolayer at each of the two air/water interfaces. The effective speed-up gained from the CG approach gives access to timescales and spatial scales that are much larger than those currently accessible with AA models.
引用
收藏
页码:9431 / 9444
页数:14
相关论文
共 30 条
[1]   Polarization around an ion in a dielectric continuum with truncated electrostatic interactions [J].
Baker, NA ;
Hünenberger, PH ;
McCammon, JA .
JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (22) :10679-10692
[2]  
BLUME A, 1993, PHOSPHOLIPIDS HDB
[3]   Molecular dynamics simulations of octyl glucoside micelles: Dynamic properties [J].
Bogusz, S ;
Venable, RM ;
Pastor, RW .
JOURNAL OF PHYSICAL CHEMISTRY B, 2001, 105 (35) :8312-8321
[4]  
CEVE G, 1993, PHOSPHOLIPIDS HDB
[5]   Dynamical properties of phospholipid bilayers from computer simulation [J].
Essmann, U ;
Berkowitz, ML .
BIOPHYSICAL JOURNAL, 1999, 76 (04) :2081-2089
[6]   Effect of electrostatic force truncation on interfacial and transport properties of water [J].
Feller, SE ;
Pastor, RW ;
Rojnuckarin, A ;
Bogusz, S ;
Brooks, BR .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (42) :17011-17020
[7]  
Frenkel D., 1996, UNDERSTANDING MOL SI
[8]  
Gennis R.B., 1989, BIOMEMBRANES MOL STR
[9]   Theoretical analysis of protein organization in lipid membranes [J].
Gil, T ;
Ipsen, JH ;
Mouritsen, OG ;
Sabra, MC ;
Sperotto, MM ;
Zuckermann, MJ .
BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON BIOMEMBRANES, 1998, 1376 (03) :245-266
[10]   Constant pressure and temperature molecular-dynamics simulation of the hydrated diphytanolphosphatidylcholine lipid bilayer [J].
Husslein, T ;
Newns, DM ;
Pattnaik, PC ;
Zhong, QF ;
Moore, PB ;
Klein, ML .
JOURNAL OF CHEMICAL PHYSICS, 1998, 109 (07) :2826-2832