The mammalian epigenome

被引:1579
作者
Bernstein, Bradley E. [1 ]
Meissner, Alexander
Lander, Eric S.
机构
[1] Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA
[2] Massachusetts Gen Hosp, Canc Res Ctr, Charlestown, MA 02129 USA
[3] Harvard Univ, Sch Med, Dept Pathol, Boston, MA 02115 USA
[4] Harvard Univ, Broad Inst, Cambridge, MA 02139 USA
[5] MIT, Cambridge, MA 02139 USA
[6] MIT, Whitehead Inst Biomed Res, Cambridge, MA 02139 USA
关键词
D O I
10.1016/j.cell.2007.01.033
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Chemical modifications to DNA and histone proteins form a complex regulatory network that modulates chromatin structure and genome function. The epigenome refers to the complete description of these potentially heritable changes across the genome. The composition of the epigenome within a given cell is a function of genetic determinants, lineage, and environment. With the sequencing of the human genome completed, investigators now seek a comprehensive view of the epigenetic changes that determine how genetic information is made manifest across an incredibly varied background of developmental stages, tissue types, and disease states. Here we review current research efforts, with an emphasis on large-scale studies, emerging technologies, and challenges ahead. © 2007 Elsevier Inc. All rights reserved.
引用
收藏
页码:669 / 681
页数:13
相关论文
共 97 条
  • [1] Chromatin signatures of pluripotent cell lines
    Azuara, V
    Perry, P
    Sauer, S
    Spivakov, M
    Jorgensen, HF
    John, RM
    Gouti, M
    Casanova, M
    Warnes, G
    Merkenschlager, M
    Fisher, AG
    [J]. NATURE CELL BIOLOGY, 2006, 8 (05) : 532 - U189
  • [2] A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    Bernstein, BE
    Mikkelsen, TS
    Xie, XH
    Kamal, M
    Huebert, DJ
    Cuff, J
    Fry, B
    Meissner, A
    Wernig, M
    Plath, K
    Jaenisch, R
    Wagschal, A
    Feil, R
    Schreiber, SL
    Lander, ES
    [J]. CELL, 2006, 125 (02) : 315 - 326
  • [3] Genomic maps and comparative analysis of histone modifications in human and mouse
    Bernstein, BE
    Kamal, M
    Lindblad-Toh, K
    Bekiranov, S
    Bailey, DK
    Huebert, DJ
    McMahon, S
    Karlsson, EK
    Kulbokas, EJ
    Gingeras, TR
    Schreiber, SL
    Lander, ES
    [J]. CELL, 2005, 120 (02) : 169 - 181
  • [4] Human embryonic stem cells have a unique epigenetic signature
    Bibikova, Marina
    Chudin, Eugene
    Wu, Bonnie
    Zhou, Lixin
    Garcia, Eliza Wickham
    Liu, Ying
    Shin, Soojung
    Plaia, Todd W.
    Auerbach, Jonathan M.
    Arking, Dan E.
    Gonzalez, Rodolfo
    Crook, Jeremy
    Davidson, Bruce
    Schulz, Thomas C.
    Robins, Allan
    Khanna, Aparna
    Sartipy, Peter
    Hyllner, Johan
    Vanguri, Padmavathy
    Savant-Bhonsale, Smita
    Smith, Alan K.
    Chakravarti, Aravinda
    Maitra, Anirban
    Rao, Mahendra
    Barker, David L.
    Loring, Jeanne F.
    Fan, Jian-Bing
    [J]. GENOME RESEARCH, 2006, 16 (09) : 1075 - 1083
  • [5] DNA methylation patterns and epigenetic memory
    Bird, A
    [J]. GENES & DEVELOPMENT, 2002, 16 (01) : 6 - 21
  • [6] The MT domain of the proto-oncoprotein MLL binds to CpG-containing DNA and discriminates against methylation
    Birke, M
    Schreiner, S
    García-Cuéllar, MP
    Mahr, K
    Titgemeyer, F
    Slany, RK
    [J]. NUCLEIC ACIDS RESEARCH, 2002, 30 (04) : 958 - 965
  • [7] Reprogramming efficiency following somatic cell nuclear transfer is influenced by the differentiation and methylation state of the donor nucleus
    Blelloch, Robert
    Wang, Zhongde
    Meissner, Alex
    Pollard, Steven
    Smith, Austin
    Jaenisch, Rudolf
    [J]. STEM CELLS, 2006, 24 (09) : 2007 - 2013
  • [8] CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure
    Bock, Christoph
    Paulsen, Martina
    Tierling, Sascha
    Mikeska, Thomas
    Lengauer, Thomas
    Walter, Joern
    [J]. PLOS GENETICS, 2006, 2 (03): : 243 - 252
  • [9] Polycomb complexes repress developmental regulators in murine embryonic stem cells
    Boyer, LA
    Plath, K
    Zeitlinger, J
    Brambrink, T
    Medeiros, LA
    Lee, TI
    Levine, SS
    Wernig, M
    Tajonar, A
    Ray, MK
    Bell, GW
    Otte, AP
    Vidal, M
    Gifford, DK
    Young, RA
    Jaenisch, R
    [J]. NATURE, 2006, 441 (7091) : 349 - 353
  • [10] Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions
    Bracken, AP
    Dietrich, N
    Pasini, D
    Hansen, KH
    Helin, K
    [J]. GENES & DEVELOPMENT, 2006, 20 (09) : 1123 - 1136