Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds

被引：635

作者：

Gibbs, Richard A. ^{[2
,3
]}

Taylor, Jeremy F. ^{[4
]}

Van Tassell, Curtis P. ^{[1
]}

Barendse, William ^{[5
,6
]}

Eversoie, Kallye A. ^{[7
]}

Gill, Clare A. ^{[8
]}

Green, Ronnie D. ^{[9
]}

Hamernik, Debora L. ^{[10
]}

Kappes, Steven M. ^{[9
]}

Lien, Sigbjorn ^{[11
,12
]}

Matukumalli, Lakshmi K. ^{[1
,13
]}

McEwan, John C. ^{[14
]}

Nazareth, Lynne V. ^{[2
,3
]}

Schnabel, Robert D. ^{[4
]}

Taylor, Jeremy F. ^{[4
]}

Weinstock, George M. ^{[2
,3
]}

Wheeler, David A. ^{[2
,3
]}

Ajmone-Marsan, Paolo ^{[15
]}

Barendse, William ^{[5
,6
]}

Boettcher, Paul J. ^{[16
]}

Caetano, Alexandre R. ^{[17
]}

Garcia, Jose Fernando ^{[16
,18
]}

Hanotte, Olivier ^{[19
]}

Mariani, Paola

Skow, Loren C. ^{[20
]}

Williams, John L. ^{[21
]}

Caetano, Alexandre R. ^{[17
]}

Diallo, Boubacar ^{[22
]}

Green, Ronnie D. ^{[9
]}

Hailemariam, Lemecha ^{[23
]}

Hanotte, Olivier ^{[19
]}

Martinez, Mario L. ^{[24
]}

Morris, Chris A. ^{[25
]}

Silva, Luiz O. C. ^{[26
]}

Spelman, Richard J. ^{[27
]}

Taylor, Jeremy F. ^{[4
]}

Mulatu, Woudyalew ^{[28
]}

Zhao, Keyan ^{[29
]}

Abbey, Colette A. ^{[8
]}

Agaba, Morris ^{[19
]}

Araujo, Flabio R. ^{[26
]}

Bunch, Rowan J. ^{[5
,6
]}

Burton, James ^{[30
]}

Gill, Clare A. ^{[8
]}

Gorni, Chiara

Olivier, Hanotte ^{[9
]}

Harrison, Blair E. ^{[5
,6
]}

Luff, Bill

Machado, Marco A. ^{[24
]}

Mariani, Paola

机构：

[1] ARS, USDA, Bovine Funct Genom Lab, BARC E, Beltsville, MD 20705 USA

[2] Baylor Coll Med, Human Genome Sequencing Ctr, Houston, TX 77030 USA

[3] Baylor Coll Med, Dept Mol & Human Genet, Houston, TX 77030 USA

[4] Univ Missouri, Div Anim Sci, Columbia, MO 65211 USA

[5] CSIRO, Livestock Ind, St Lucia, Qld 4067, Australia

[6] Univ New England, CRC, Beef Genet Technol, Armidale, NSW 2351, Australia

[7] Alliance Anim Genome Res, Bethesda, MD 20816 USA

[8] Texas A&M Univ, Dept Anim Sci, College Stn, TX 77843 USA

[9] ARS, USDA, Natl Program Staff, Beltsville, MD 20705 USA

[10] USDA Cooperat State Res Educ & Extens Serv, Washington, DC 20250 USA

[11] Norwegian Univ Life Sci, Ctr Integrat Genet, N-1432 As, Norway

[12] Norwegian Univ Life Sci, Dept Anim & Aquacultural Sci, N-1432 As, Norway

[13] George Mason Univ, Dept Bioinformat & Computat Biol, Manassas, VA USA

[14] AgResearch, Anim Genom, Invermay 9053, Mosgiel, New Zealand

[15] Univ Cattolica Sacro Cuore, Ist Zootecn, I-29100 Piacenza, Italy

[16] IAEA, Joint United Nations FAO, Div Nucl Tech Food & Agr, A-1400 Vienna, Austria

[17] Embrapa Genet Resources & Biotechnol Ctr, BR-70770900 Brasilia, DF, Brazil

[18] UNESP, Dept Anim Prod & Hlth, IAEA, Collaborat Ctr Anim Genom & Bioinformat, BR-16050680 Aracatuba, SP, Brazil

[19] Int Livestock Res Inst, Nairobi 00100, Kenya

[20] Texas A&M Univ, Coll Vet Med & Biomed Sci, Dept Vet Integrat Biol Sci, College Stn, TX 77843 USA

[21] Univ Edinburgh, Royal Dick Sch Vet Studies, Roslin Inst, Roslin E25 9PS, Midlothian, Scotland

[22] Direct Natl Elevage, Conakry, Guinea

[23] Ethiopian Inst Agr Res, Addis Ababa, Ethiopia

[24] Embrapa Dairy Cattle Ctr, BR-36038330 Juiz De Fora, MG, Brazil

[25] AgResearch, Anim Genom, Hamilton 3240, New Zealand

[26] Embrapa Beef Cattle Ctr, BR-79002970 Campo Grande, MS, Brazil

[27] LIC, Res & Dev, Hamilton 3240, New Zealand

[28] Int Livestock Res Inst, Addis Ababa, Ethiopia

[29] Cornell Univ, Dept Biol Stat & Computat Biol, Ithaca, NY 14853 USA

[30] Univ Edinburgh Summerhall, Royal Dick Sch Vet Studies, Edinburgh EH9 1QH, Midlothian, Scotland

[31] Univ Alberta, AgFor Ctr 410, Edmonton, AB T6G 2P5, Canada

[32] ARS, USDA, US Meat Anim Res Ctr, Mol Genet Res Unit, Clay Ctr, NE 68933 USA

[33] Univ Tuscia, Dipartimento Prod Anim, I-01100 Viterbo, Italy

[34] Texas A&M Univ, Coll Vet Med & Biomed Sci, Dept Vet Pathobiol, College Stn, TX 77843 USA

[35] Wellcome Trust Sanger Inst, Hinxton CB10 1SA, England

[36] Univ Melbourne, Fac Land & Food Resources, Parkville, Vic 3010, Australia

[37] Trinity Coll Dublin, Smurfit Inst Genet, Dublin 2, Ireland

[38] Simon Fraser Univ, Dept Mol Biol & Biochem, Burnaby, BC V5A 1S6, Canada

来源：

SCIENCE | 2009年 / 324卷 / 5926期

基金：

英国生物技术与生命科学研究理事会; 美国国家卫生研究院;

关键词：

MISSENSE MUTATION; MILK-YIELD; IDENTIFICATION; SELECTION; ORIGIN; SCANS; QTL;

D O I：

10.1126/science.1167936

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The imprints of domestication and breed development on the genomes of livestock likely differ from those of companion animals. A deep draft sequence assembly of shotgun reads from a single Hereford female and comparative sequences sampled from six additional breeds were used to develop probes to interrogate 37,470 single-nucleotide polymorphisms (SNPs) in 497 cattle from 19 geographically and biologically diverse breeds. These data show that cattle have undergone a rapid recent decrease in effective population size from a very large ancestral population, possibly due to bottlenecks associated with domestication, selection, and breed formation. Domestication and artificial selection appear to have left detectable signatures of selection within the cattle genome, yet the current levels of diversity within breeds are at least as great as exists within humans.

引用

页码：528 / 532

页数：5

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