The structure of adenylosuccinate lyase, an enzyme with dual activity in the de novo purine biosynthetic pathway

被引:84
作者
Toth, EA
Yeates, TO
机构
[1] Univ Calif Los Angeles, Dept Chem & Biochem, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, Lab Struct Biol & Mol Med, Los Angeles, CA 90095 USA
来源
STRUCTURE WITH FOLDING & DESIGN | 2000年 / 8卷 / 02期
基金
美国国家卫生研究院;
关键词
beta-elimination superfamily; lyase; purine biosynthesis;
D O I
10.1016/S0969-2126(00)00092-7
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Background: Adenylosuccinate lyase is an enzyme that plays a critical role in both:cellular replication and metabolism via its action in the de novo purine biosynthetic pathway. Adenylosuccinate lyase is the only enzyme in:this pathway to catalyze two separate reactions, enabling ii to participate,in:the addition of a nitrogen at two different positions in adenosine monophosphate. Both reactions catalyzed by adenylosuccinate lyase involve the beta-elimination of fumarate. Enzymes that catalyze this type of reaction belong to a superfamily, the members of which are homotetramers. Because adenylosuccinate lyase plays, an integral part in maintaining proper cellular metabolism, mutations in the human enzyme can have severe clinical consequences, including mental retardation with autistic features. Results: The 1.8 Angstrom crystal structure of adenylosuccinate lyase from Thermotoga maritima has been determined by multiwavelength anomalous dispersion using the selenomethionine-substituted enzyme. The fold of the monomer: is reminiscent of other members of the beta-elimination superfamily. However, its active tetrameric form:exhibits striking differences in active-site architecture and cleft size. Conclusions: This first structure of an adenylosuccinate lyase reveals that, along with the catalytic base (His141) and the catalytic acid (His68), Gln212 and Asn270 might play a vital role in catalysis by properly orienting:the succinyl moiety bf the substrates. We propose a model for the dual activity of adenylosuccinate lyase: a single 180 degrees bond rotation must occur in the substrate between the first and second enzymatic reactions, Modeling of the pathogenic human S413P mutation indicates that the mutation destabilizes the enzyme by disrupting the C-terminal extension.
引用
收藏
页码:163 / 174
页数:12
相关论文
共 40 条
[1]  
[Anonymous], [No title captured]
[2]   A METHOD TO IDENTIFY PROTEIN SEQUENCES THAT FOLD INTO A KNOWN 3-DIMENSIONAL STRUCTURE [J].
BOWIE, JU ;
LUTHY, R ;
EISENBERG, D .
SCIENCE, 1991, 253 (5016) :164-170
[3]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[4]   Ribbons [J].
Carson, M .
MACROMOLECULAR CRYSTALLOGRAPHY, PT B, 1997, 277 :493-505
[5]   Mutational analysis of amino acid residues involved in argininosuccinate lyase activity in duck δ II crystallin [J].
Chakraborty, AR ;
Davidson, A ;
Howell, PL .
BIOCHEMISTRY, 1999, 38 (08) :2435-2443
[6]   VERIFICATION OF PROTEIN STRUCTURES - PATTERNS OF NONBONDED ATOMIC INTERACTIONS [J].
COLOVOS, C ;
YEATES, TO .
PROTEIN SCIENCE, 1993, 2 (09) :1511-1519
[7]  
Cowtan K., 1994, JOINT CCP4 ESF EACBM, V31, P34
[8]  
Ewing TJA, 1997, J COMPUT CHEM, V18, P1175, DOI 10.1002/(SICI)1096-987X(19970715)18:9<1175::AID-JCC6>3.0.CO
[9]  
2-O
[10]  
JAEKEN J, 1984, LANCET, V2, P1058