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Shufflers:: shuffling sequences while conserving the k-let counts
被引:25
作者
:
Coward, E
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Versailles, Lab Genome & Informat, F-78035 Versailles, France
Univ Versailles, Lab Genome & Informat, F-78035 Versailles, France
Coward, E
[
1
]
机构
:
[1]
Univ Versailles, Lab Genome & Informat, F-78035 Versailles, France
来源
:
BIOINFORMATICS
|
1999年
/ 15卷
/ 12期
关键词
:
D O I
:
10.1093/bioinformatics/15.12.1058
中图分类号
:
Q5 [生物化学];
学科分类号
:
071010 ;
081704 ;
摘要
:
Shufflet is a program and a web-application that generates fast random shufflings of sequences (DNA, protein or others), conserving the exact k-let counts for a given k. The sequences are sampled uniformly from all the valid permutations.
引用
收藏
页码:1058 / 1059
页数:2
相关论文
共 9 条
[1]
ALTSCHUL SF, 1985, MOL BIOL EVOL, V2, P526
[2]
COMET JP, 1999, IN PRESS COMPUT CHEM
[3]
DEVEREUX J, 1989, GCG SEQUENCE ANAL SO
[4]
RANDOM SEQUENCES
FITCH, WM
论文数:
0
引用数:
0
h-index:
0
FITCH, WM
[J].
JOURNAL OF MOLECULAR BIOLOGY,
1983,
163
(02)
: 171
-
176
[5]
Shuffling biological sequences
Kandel, D
论文数:
0
引用数:
0
h-index:
0
机构:
AT&T BELL LABS,MURRAY HILL,NJ 07974
Kandel, D
Matias, Y
论文数:
0
引用数:
0
h-index:
0
机构:
AT&T BELL LABS,MURRAY HILL,NJ 07974
Matias, Y
论文数:
引用数:
h-index:
机构:
Unger, R
Winkler, P
论文数:
0
引用数:
0
h-index:
0
机构:
AT&T BELL LABS,MURRAY HILL,NJ 07974
Winkler, P
[J].
DISCRETE APPLIED MATHEMATICS,
1996,
71
(1-3)
: 171
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185
[6]
RAPID AND SENSITIVE PROTEIN SIMILARITY SEARCHES
LIPMAN, DJ
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV VIRGINIA,DEPT BIOCHEM,CHARLOTTESVILLE,VA 22908
UNIV VIRGINIA,DEPT BIOCHEM,CHARLOTTESVILLE,VA 22908
LIPMAN, DJ
PEARSON, WR
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV VIRGINIA,DEPT BIOCHEM,CHARLOTTESVILLE,VA 22908
UNIV VIRGINIA,DEPT BIOCHEM,CHARLOTTESVILLE,VA 22908
PEARSON, WR
[J].
SCIENCE,
1985,
227
(4693)
: 1435
-
1441
[7]
ON THE STATISTICAL SIGNIFICANCE OF NUCLEIC-ACID SIMILARITIES
LIPMAN, DJ
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV SO CALIF,DEPT MATH,LOS ANGELES,CA 90089
LIPMAN, DJ
WILBUR, WJ
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV SO CALIF,DEPT MATH,LOS ANGELES,CA 90089
WILBUR, WJ
SMITH, TF
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV SO CALIF,DEPT MATH,LOS ANGELES,CA 90089
SMITH, TF
WATERMAN, MS
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV SO CALIF,DEPT MATH,LOS ANGELES,CA 90089
WATERMAN, MS
[J].
NUCLEIC ACIDS RESEARCH,
1984,
12
(01)
: 215
-
226
[8]
Ripley B.D., 1987, Stochastic Simulation
[9]
UNGER R, 1986, P MACR GEN COMP C
←
1
→
共 9 条
[1]
ALTSCHUL SF, 1985, MOL BIOL EVOL, V2, P526
[2]
COMET JP, 1999, IN PRESS COMPUT CHEM
[3]
DEVEREUX J, 1989, GCG SEQUENCE ANAL SO
[4]
RANDOM SEQUENCES
FITCH, WM
论文数:
0
引用数:
0
h-index:
0
FITCH, WM
[J].
JOURNAL OF MOLECULAR BIOLOGY,
1983,
163
(02)
: 171
-
176
[5]
Shuffling biological sequences
Kandel, D
论文数:
0
引用数:
0
h-index:
0
机构:
AT&T BELL LABS,MURRAY HILL,NJ 07974
Kandel, D
Matias, Y
论文数:
0
引用数:
0
h-index:
0
机构:
AT&T BELL LABS,MURRAY HILL,NJ 07974
Matias, Y
论文数:
引用数:
h-index:
机构:
Unger, R
Winkler, P
论文数:
0
引用数:
0
h-index:
0
机构:
AT&T BELL LABS,MURRAY HILL,NJ 07974
Winkler, P
[J].
DISCRETE APPLIED MATHEMATICS,
1996,
71
(1-3)
: 171
-
185
[6]
RAPID AND SENSITIVE PROTEIN SIMILARITY SEARCHES
LIPMAN, DJ
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV VIRGINIA,DEPT BIOCHEM,CHARLOTTESVILLE,VA 22908
UNIV VIRGINIA,DEPT BIOCHEM,CHARLOTTESVILLE,VA 22908
LIPMAN, DJ
PEARSON, WR
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV VIRGINIA,DEPT BIOCHEM,CHARLOTTESVILLE,VA 22908
UNIV VIRGINIA,DEPT BIOCHEM,CHARLOTTESVILLE,VA 22908
PEARSON, WR
[J].
SCIENCE,
1985,
227
(4693)
: 1435
-
1441
[7]
ON THE STATISTICAL SIGNIFICANCE OF NUCLEIC-ACID SIMILARITIES
LIPMAN, DJ
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV SO CALIF,DEPT MATH,LOS ANGELES,CA 90089
LIPMAN, DJ
WILBUR, WJ
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV SO CALIF,DEPT MATH,LOS ANGELES,CA 90089
WILBUR, WJ
SMITH, TF
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV SO CALIF,DEPT MATH,LOS ANGELES,CA 90089
SMITH, TF
WATERMAN, MS
论文数:
0
引用数:
0
h-index:
0
机构:
UNIV SO CALIF,DEPT MATH,LOS ANGELES,CA 90089
WATERMAN, MS
[J].
NUCLEIC ACIDS RESEARCH,
1984,
12
(01)
: 215
-
226
[8]
Ripley B.D., 1987, Stochastic Simulation
[9]
UNGER R, 1986, P MACR GEN COMP C
←
1
→