Shufflers:: shuffling sequences while conserving the k-let counts

被引:25
作者
Coward, E [1 ]
机构
[1] Univ Versailles, Lab Genome & Informat, F-78035 Versailles, France
关键词
D O I
10.1093/bioinformatics/15.12.1058
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Shufflet is a program and a web-application that generates fast random shufflings of sequences (DNA, protein or others), conserving the exact k-let counts for a given k. The sequences are sampled uniformly from all the valid permutations.
引用
收藏
页码:1058 / 1059
页数:2
相关论文
共 9 条
  • [1] ALTSCHUL SF, 1985, MOL BIOL EVOL, V2, P526
  • [2] COMET JP, 1999, IN PRESS COMPUT CHEM
  • [3] DEVEREUX J, 1989, GCG SEQUENCE ANAL SO
  • [4] RANDOM SEQUENCES
    FITCH, WM
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1983, 163 (02) : 171 - 176
  • [5] Shuffling biological sequences
    Kandel, D
    Matias, Y
    Unger, R
    Winkler, P
    [J]. DISCRETE APPLIED MATHEMATICS, 1996, 71 (1-3) : 171 - 185
  • [6] RAPID AND SENSITIVE PROTEIN SIMILARITY SEARCHES
    LIPMAN, DJ
    PEARSON, WR
    [J]. SCIENCE, 1985, 227 (4693) : 1435 - 1441
  • [7] ON THE STATISTICAL SIGNIFICANCE OF NUCLEIC-ACID SIMILARITIES
    LIPMAN, DJ
    WILBUR, WJ
    SMITH, TF
    WATERMAN, MS
    [J]. NUCLEIC ACIDS RESEARCH, 1984, 12 (01) : 215 - 226
  • [8] Ripley B.D., 1987, Stochastic Simulation
  • [9] UNGER R, 1986, P MACR GEN COMP C