Endemism and functional convergence across the North American soil mycobiome

被引:431
作者
Talbot, Jennifer M. [1 ]
Bruns, Thomas D. [2 ]
Taylor, John W. [2 ]
Smith, Dylan P. [1 ]
Branco, Sara [2 ]
Glassman, Sydney I. [2 ]
Erlandson, Sonya [1 ]
Vilgalys, Rytas [3 ]
Liao, Hui-Ling [3 ]
Smith, Matthew E. [4 ]
Peay, Kabir G. [1 ]
机构
[1] Stanford Univ, Dept Biol, Stanford, CA 94305 USA
[2] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94702 USA
[3] Duke Univ, Dept Biol, Durham, NC 27708 USA
[4] Univ Florida, Dept Plant Pathol, Gainesville, FL 32611 USA
基金
美国国家科学基金会; 美国海洋和大气管理局;
关键词
biogeochemistry; biogeography; forest; soil carbon; ectomycorrhizal fungi; COMMUNITY STRUCTURE; GLOBAL PATTERNS; LITTER DECOMPOSITION; FUNGAL COMMUNITIES; ECTOMYCORRHIZAL; DIVERSITY; PLANT; ECOLOGY; SCALE; MICROORGANISMS;
D O I
10.1073/pnas.1402584111
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Identifying the ecological processes that structure communities and the consequences for ecosystem function is a central goal of ecology. The recognition that fungi, bacteria, and viruses control key ecosystem functions has made microbial communities a major focus of this field. Because many ecological processes are apparent only at particular spatial or temporal scales, a complete understanding of the linkages between microbial community, environment, and function requires analysis across a wide range of scales. Here, we map the biological and functional geography of soil fungi from local to continental scales and show that the principal ecological processes controlling community structure and function operate at different scales. Similar to plants or animals, most soil fungi are endemic to particular bioregions, suggesting that factors operating at large spatial scales, like dispersal limitation or climate, are the first-order determinants of fungal community structure in nature. By contrast, soil extracellular enzyme activity is highly convergent across bioregions and widely differing fungal communities. Instead, soil enzyme activity is correlated with local soil environment and distribution of fungal traits within the community. The lack of structure-function relationships for soil fungal communities at continental scales indicates a high degree of functional redundancy among fungal communities in global biogeochemical cycles.
引用
收藏
页码:6341 / 6346
页数:6
相关论文
共 67 条
[1]   Isolation by landscape in populations of a prized edible mushroom Tricholoma matsutake [J].
Amend, Anthony ;
Garbelotto, Matteo ;
Fang, Zhendong ;
Keeley, Sterling .
CONSERVATION GENETICS, 2010, 11 (03) :795-802
[2]  
Araujo R., 2010, Open Forensic Science Journal, V3, P14
[3]   Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage [J].
Averill, Colin ;
Turner, Benjamin L. ;
Finzi, Adrien C. .
NATURE, 2014, 505 (7484) :543-+
[4]   The geographic range: Size, shape, boundaries, and internal structure [J].
Brown, JH ;
Stevens, GC ;
Kaufman, DM .
ANNUAL REVIEW OF ECOLOGY AND SYSTEMATICS, 1996, 27 :597-623
[5]   QIIME allows analysis of high-throughput community sequencing data [J].
Caporaso, J. Gregory ;
Kuczynski, Justin ;
Stombaugh, Jesse ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
Costello, Elizabeth K. ;
Fierer, Noah ;
Pena, Antonio Gonzalez ;
Goodrich, Julia K. ;
Gordon, Jeffrey I. ;
Huttley, Gavin A. ;
Kelley, Scott T. ;
Knights, Dan ;
Koenig, Jeremy E. ;
Ley, Ruth E. ;
Lozupone, Catherine A. ;
McDonald, Daniel ;
Muegge, Brian D. ;
Pirrung, Meg ;
Reeder, Jens ;
Sevinsky, Joel R. ;
Tumbaugh, Peter J. ;
Walters, William A. ;
Widmann, Jeremy ;
Yatsunenko, Tanya ;
Zaneveld, Jesse ;
Knight, Rob .
NATURE METHODS, 2010, 7 (05) :335-336
[6]   Effects of biodiversity on the functioning of trophic groups and ecosystems [J].
Cardinale, Bradley J. ;
Srivastava, Diane S. ;
Duffy, J. Emmett ;
Wright, Justin P. ;
Downing, Amy L. ;
Sankaran, Mahesh ;
Jouseau, Claire .
NATURE, 2006, 443 (7114) :989-992
[7]   Metatranscriptomics Reveals the Diversity of Genes Expressed by Eukaryotes in Forest Soils [J].
Damon, Coralie ;
Lehembre, Frederic ;
Oger-Desfeux, Christine ;
Luis, Patricia ;
Ranger, Jacques ;
Fraissinet-Tachet, Laurence ;
Marmeisse, Roland .
PLOS ONE, 2012, 7 (01)
[8]   Functional metagenomic profiling of nine biomes [J].
Dinsdale, Elizabeth A. ;
Edwards, Robert A. ;
Hall, Dana ;
Angly, Florent ;
Breitbart, Mya ;
Brulc, Jennifer M. ;
Furlan, Mike ;
Desnues, Christelle ;
Haynes, Matthew ;
Li, Linlin ;
McDaniel, Lauren ;
Moran, Mary Ann ;
Nelson, Karen E. ;
Nilsson, Christina ;
Olson, Robert ;
Paul, John ;
Brito, Beltran Rodriguez ;
Ruan, Yijun ;
Swan, Brandon K. ;
Stevens, Rick ;
Valentine, David L. ;
Thurber, Rebecca Vega ;
Wegley, Linda ;
White, Bryan A. ;
Rohwer, Forest .
NATURE, 2008, 452 (7187) :629-U8
[9]   Search and clustering orders of magnitude faster than BLAST [J].
Edgar, Robert C. .
BIOINFORMATICS, 2010, 26 (19) :2460-2461
[10]   Phylogenetic similarity and structure of Agaricomycotina communities across a forested landscape [J].
Edwards, Ivan P. ;
Zak, Donald R. .
MOLECULAR ECOLOGY, 2010, 19 (07) :1469-1482