The Protein Data Bank

被引:30159
作者
Berman, HM
Westbrook, J
Feng, Z
Gilliland, G
Bhat, TN
Weissig, H
Shindyalov, IN
Bourne, PE
机构
[1] Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA
[2] Rutgers State Univ, Res Collab Struct Bioinformat, Piscataway, NJ 08854 USA
[3] Natl Inst Stand & Technol, Gaithersburg, MD 20899 USA
[4] Univ Calif San Diego, San Diego Supercomp Ctr, La Jolla, CA 92093 USA
[5] Univ Calif San Diego, Dept Pharmacol, La Jolla, CA 92093 USA
[6] Burnham Inst, La Jolla, CA 92037 USA
关键词
D O I
10.1093/nar/28.1.235
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Protein Data Bank (PDB; http://www.rcsb.org/pdb/) is the-single worldwide archive of structural data of biological macromolecules. This paper describes the goals of the PDB, the systems in place for data deposition and access, how to obtain further information, and near-term plans for the future development of the resource.
引用
收藏
页码:235 / 242
页数:8
相关论文
共 36 条
  • [1] THE NUCLEIC-ACID DATABASE - A COMPREHENSIVE RELATIONAL DATABASE OF 3-DIMENSIONAL STRUCTURES OF NUCLEIC-ACIDS
    BERMAN, HM
    OLSON, WK
    BEVERIDGE, DL
    WESTBROOK, J
    GELBIN, A
    DEMENY, T
    HSIEH, SH
    SRINIVASAN, AR
    SCHNEIDER, B
    [J]. BIOPHYSICAL JOURNAL, 1992, 63 (03) : 751 - 759
  • [2] PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES
    BERNSTEIN, FC
    KOETZLE, TF
    WILLIAMS, GJB
    MEYER, EF
    BRICE, MD
    RODGERS, JR
    KENNARD, O
    SHIMANOUCHI, T
    TASUMI, M
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) : 535 - 542
  • [3] CIF applications. VIII. pdb2cif: translating PDB entries into mmCIF format
    Bernstein, HJ
    Bernstein, FC
    Bourne, PE
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1998, 31 : 282 - 295
  • [4] Macromolecular crystallographic information file
    Bourne, PE
    Berman, HM
    McMahon, B
    Watenpaugh, KD
    Westbrook, JD
    Fitzgerald, PMD
    [J]. MACROMOLECULAR CRYSTALLOGRAPHY, PT B, 1997, 277 : 571 - 590
  • [5] Geometric parameters in nucleic acids: Nitrogenous bases
    Clowney, L
    Jain, SC
    Srinivasan, AR
    Westbrook, J
    Olson, WK
    Berman, HM
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (03) : 509 - 518
  • [6] The HSSP database of protein structure sequence alignments and family profiles
    Dodge, C
    Schneider, R
    Sander, C
    [J]. NUCLEIC ACIDS RESEARCH, 1998, 26 (01) : 313 - 315
  • [7] ACCURATE BOND AND ANGLE PARAMETERS FOR X-RAY PROTEIN-STRUCTURE REFINEMENT
    ENGH, RA
    HUBER, R
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1991, 47 : 392 - 400
  • [8] Geometric parameters in nucleic acids: Sugar and phosphate constituents
    Gelbin, A
    Schneider, B
    Clowney, L
    Hsieh, SH
    Olson, WK
    Berman, HM
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (03) : 519 - 529
  • [9] Surprising similarities in structure comparison
    Gibrat, JF
    Madej, T
    Bryant, SH
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 1996, 6 (03) : 377 - 385