Bovine seminal plasma proteins and their relatives: A new expanding superfamily in mammals

被引:55
作者
Fan, Jinjiang
Lefebvre, Jasmine
Manjunath, Puttaswamy
机构
[1] Hop Maison Neuve Rosemont, Ctr Rech Guy Bernier, Montreal, PQ H1T 2M4, Canada
[2] Univ Montreal, Dept Biochem, Montreal, PQ, Canada
[3] Univ Montreal, Dept Med, Montreal, PQ, Canada
基金
加拿大健康研究院;
关键词
BSP proteins; fibronectin type 2 domain; phylogeny; positive selection;
D O I
10.1016/j.gene.2006.02.025
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
BSP proteins represent three major proteins of bovine seminal plasma: BSP-A1/-A2, -A3 and -30 kDa. The BSP protein signature is characterized by two tandemly repeated fibronectin type 2 (Fn2) domains. Although classical affinity chromatography and protein sequencing have proven that the BSP protein homologs may be ubiquitous in mammals and functionally related to sperm capacitation, only the three bovine genes have been reported thus far. In this study, we report three new BSP protein-related genes from bovine, as well as other BSP protein-related DNA sequences from human, chimpanzee, mouse, rat, dog, horse and rabbit. Analysis of the relationships between all Fn2 domain-containing proteins revealed that the Fn2 domains found in BSP-related proteins have special features that distinguish them from non-BSP-related proteins. These features can be used to identify new BSP protein-related sequences. Further molecular evolutionary analysis of the BSP protein lineage revealed that all BSP proteins and their related sequences can be grouped into three subfamilies: BSPH4, BSPH5 and BSPH6, which indicates that the BSP protein family is much bigger than previously envisioned. More interestingly, the three BSP proteins in bovine within the BSPH4-subfamily were shown to evolve rapidly. The ratio of nonsynonymous to synonymous substitutions was higher than 1. The analysis also indicated that the rate of evolution was heterogeneous between the first and second Fn2 domains of the genes. These data may reflect that some amino acids in BSP proteins are under a strong positive selection after gene duplication and that each BSP protein evolves rapidly, possibly to acquire new functions. (c) 2006 Elsevier B.V All rights reserved.
引用
收藏
页码:63 / 74
页数:12
相关论文
共 52 条
[1]   Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution [J].
Anisimova, M ;
Bielawski, JP ;
Yang, ZH .
MOLECULAR BIOLOGY AND EVOLUTION, 2001, 18 (08) :1585-1592
[2]  
[Anonymous], 2004, PHYLIP PHYLOGENY INF
[4]   IDENTIFICATION OF HEPARIN-BINDING PROTEINS IN BOVINE SEMINAL PLASMA [J].
CHANDONNET, L ;
ROBERTS, KD ;
CHAPDELAINE, A ;
MANJUNATH, P .
MOLECULAR REPRODUCTION AND DEVELOPMENT, 1990, 26 (04) :313-318
[5]   K-estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals [J].
Comeron, JM .
BIOINFORMATICS, 1999, 15 (09) :763-764
[6]   Mapping sites of positive selection and amino acid diversification in the HIV genome: An alternative approach to vaccine design? [J].
de Oliveira, T ;
Salemi, M ;
Gordon, M ;
Vandamme, AM ;
van Rensburg, E ;
Engelbrecht, S ;
Coovadia, HM ;
Cassol, S .
GENETICS, 2004, 167 (03) :1047-1058
[7]   INTERACTION OF A NOVEL CLASS OF PHOSPHOLIPID-BINDING PROTEINS OF BOVINE SEMINAL FLUID WITH DIFFERENT AFFINITY MATRICES [J].
DESNOYERS, L ;
MANJUNATH, P .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1993, 305 (02) :341-349
[8]  
DESNOYERS L, 1992, J BIOL CHEM, V267, P10149
[9]   Phylogenomics: Intersection of evolution and genomics [J].
Eisen, JA ;
Fraser, CM .
SCIENCE, 2003, 300 (5626) :1706-1707
[10]   A phylogenomic study of DNA repair genes, proteins, and processes [J].
Eisen, JA ;
Hanawalt, PC .
MUTATION RESEARCH-DNA REPAIR, 1999, 435 (03) :171-213