A new algorithm for molecular fragmentation in quantum chemical calculations

被引:104
作者
Bettens, Ryan P. A. [1 ]
Lee, Adrian M. [1 ]
机构
[1] Natl Univ Singapore, Dept Chem, Singapore 117543, Singapore
关键词
D O I
10.1021/jp062104n
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this study, we present a "black-box" method for fragmenting a molecule with a well-defined Kekule or valence-bond structure into a significant number of smaller fragment molecules that are more amenable to high level quantum chemical calculations. By taking an appropriate linear combination of the fragment energies, we show that it is possible in many cases to obtain highly accurate total energies when compared to the total energy of the full molecule. Our method is derived from the approach reported by Deev and Collins, 43 but it contains significant unique elements, including an isodesmic approach to the fragmentation process. Using a method such as that described in this work it is in principle possible to obtain very accurate total energies of systems containing hundreds, if not thousands, of atoms as the approach is subject to massive parallelization.
引用
收藏
页码:8777 / 8785
页数:9
相关论文
共 59 条
[1]  
[Anonymous], COMPUTATIONAL THERMO
[2]   Tailoring approach for exploring electron densities and electrostatic potentials of molecular crystals [J].
Babu, K ;
Ganesh, V ;
Gadre, SR ;
Ghermani, NE .
THEORETICAL CHEMISTRY ACCOUNTS, 2004, 111 (2-6) :255-263
[3]   Ab initio quality one-electron properties of large molecules: Development and testing of molecular tailoring approach [J].
Babu, K ;
Gadre, SR .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2003, 24 (04) :484-495
[4]   A linear scaling method for Hartree-Fock exchange calculations of large molecules [J].
Burant, JC ;
Scuseria, GE ;
Frisch, MJ .
JOURNAL OF CHEMICAL PHYSICS, 1996, 105 (19) :8969-8972
[5]   Catalytic mechanism of dihydrofolate reductase enzyme.: A combined quantum-mechanical/molecular-mechanical characterization of transition state structure for the hydride transfer step [J].
Castillo, R ;
Andrés, J ;
Moliner, V .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (51) :12140-12147
[6]   Fast assembly of the Coulomb matrix: A quantum chemical tree code [J].
Challacombe, M ;
Schwegler, E ;
Almlof, J .
JOURNAL OF CHEMICAL PHYSICS, 1996, 104 (12) :4685-4698
[7]  
DAS GP, 2004, INT J QUANTUM CHEM, V120, P6832
[8]   MODEL FOR ENERGETICS OF SOLIDS BASED ON THE DENSITY-MATRIX [J].
DAW, MS .
PHYSICAL REVIEW B, 1993, 47 (16) :10895-10898
[9]   Approximate ab initio energies by systematic molecular fragmentation -: art. no. 154102 [J].
Deev, V ;
Collins, MA .
JOURNAL OF CHEMICAL PHYSICS, 2005, 122 (15)
[10]   Ab initio quality properties for macromolecules using the ADMA approach [J].
Exner, TE ;
Mezey, PG .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2003, 24 (16) :1980-1986