Phage display substrate: A blind method for determining protease specificity

被引:36
作者
Deperthes, D [1 ]
机构
[1] CHU Vaudois, Urol Res Unit, Dept Urol, CH-1011 Lausanne, Switzerland
关键词
combinatorial library; enzymatic specificity; phage display; protease; random substrate;
D O I
10.1515/BC.2002.119
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Phage display substrate enables rapid determination of protease specificity by exposing vast numbers of recombinant peptides to a given protease. Peptides released through specific cleavage are amplified in an expression system. Phage display substrate has been widely exploited and developed further. The number of proteases (from various sources) characterized by this approach testifies to its power. To conserve their advantage over chemical methods, however, phage libraries must be constructed accordingly. The current phenomenal progress in genomics steadily increases the number of protease to be studied. Phage display substrate should prove a powerful method to exploit this wealth of new knowledge.
引用
收藏
页码:1107 / 1112
页数:6
相关论文
共 30 条
[1]   Identification of efficiently cleaved substrates for HIV-1 protease using a phage display library and use in inhibitor development [J].
Beck, ZQ ;
Hervio, L ;
Dawson, PE ;
Elder, JH ;
Madison, EL .
VIROLOGY, 2000, 274 (02) :391-401
[2]   Molecular basis for the relative substrate specificity of human immunodeficiency virus type 1 and feline immunodeficiency virus proteases [J].
Beck, ZQ ;
Lin, PC ;
Elder, JH .
JOURNAL OF VIROLOGY, 2001, 75 (19) :9458-9469
[3]   In vivo selection of protease cleavage sites from retrovirus display libraries [J].
Buchholz, CJ ;
Peng, KW ;
Morling, FJ ;
Zhang, J ;
Cosset, FL ;
Russell, SJ .
NATURE BIOTECHNOLOGY, 1998, 16 (10) :951-954
[4]   A unique substrate recognition profile for matrix metalloproteinase-2 [J].
Chen, EI ;
Kridel, SJ ;
Howard, EW ;
Li, WZ ;
Godzik, A ;
Smith, JW .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (06) :4485-4491
[5]   Substrate specificity of prostate-specific antigen (PSA) [J].
Coombs, GS ;
Bergstrom, RC ;
Pellequer, JL ;
Baker, SI ;
Navre, M ;
Smith, MM ;
Tainer, JA ;
Madison, EL ;
Corey, DR .
CHEMISTRY & BIOLOGY, 1998, 5 (09) :475-488
[6]   Elastase substrate specificity tailored through substrate-assisted catalysis and phage display [J].
Dall'Acqua, W ;
Halin, C ;
Rodrigues, ML ;
Carter, P .
PROTEIN ENGINEERING, 1999, 12 (11) :981-987
[7]   Substrate specificity of human collagenase 3 assessed using a phage-displayed peptide library [J].
Deng, SJ ;
Bickett, DM ;
Mitchell, JL ;
Lambert, MH ;
Blackburn, RK ;
Carter, HL ;
Neugebauer, J ;
Pahel, G ;
Weiner, MP ;
Moss, ML .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (40) :31422-31427
[8]   ORIGINS OF THE SPECIFICITY OF TISSUE-TYPE PLASMINOGEN-ACTIVATOR [J].
DING, L ;
COOMBS, GS ;
STRANDBERG, L ;
NAVRE, M ;
COREY, DR ;
MADISON, EL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (17) :7627-7631
[9]   Rapid and general profiling of protease specificity by using combinatorial fluorogenic substrate libraries [J].
Harris, JL ;
Backes, BJ ;
Leonetti, F ;
Mahrus, S ;
Ellman, JA ;
Craik, CS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (14) :7754-7759
[10]   Definition and redesign of the extended substrate specificity of granzyme B [J].
Harris, JL ;
Peterson, EP ;
Hudig, D ;
Thornberry, NA ;
Craik, CS .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (42) :27364-27373