Different types of biological proton transfer reactions studied by quantum chemical methods

被引:52
作者
Blomberg, Margareta R. A. [1 ]
Siegbahn, Per E. M. [1 ]
机构
[1] Stockholm Univ, Dept Phys, Stockholm Ctr Phys Astron & Biotechnol, S-10691 Stockholm, Sweden
来源
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS | 2006年 / 1757卷 / 08期
关键词
quantum chemistry; density functional theory; cytochrome c oxidase; proton transfer; proton translocation;
D O I
10.1016/j.bbabio.2006.01.002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Different types of proton transfer occurring in biological systems are described with examples mainly from ribonucleotide reductase (RNR) and cytochrome c oxidase (CcO). Focus is put on situations where electron and proton transfer are rather strongly coupled. In the long range radical transfer in RNR, it is shown that the presence of hydrogen atom transfer (HAT) is the most logical explanation for the experimental observations. In another example from RNR, it is shown that a transition state for concerted motion of both proton and electron can be found even if the donors are separated by a quite long distance. In CcO, the essential proton transfer for the O-O bond cleavage, and the most recent modelings of proton translocation are described, indicating a few remaining major problems. (c) 2006 Elsevier B.V. All rights reserved.
引用
收藏
页码:969 / 980
页数:12
相关论文
共 47 条
[1]  
Babcock GT, 1995, PHOTOSYNTHESIS: FROM LIGHT TO BIOSPHERE, VOL II, P209
[2]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[3]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[4]   Metal-bridging mechanism for O-O bond cleavage in cytochrome c oxidase [J].
Blomberg, MRA ;
Siegbahn, PEM ;
Wikström, M .
INORGANIC CHEMISTRY, 2003, 42 (17) :5231-5243
[5]   Modeling cytochrome oxidase:: A quantum chemical study of the O-O bond cleavage mechanism [J].
Blomberg, MRA ;
Siegbahn, PEM ;
Babcock, GT ;
Wikström, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (51) :12848-12858
[6]   Redox-driven proton pumping by heme-copper oxidases [J].
Brzezinski, P ;
Larsson, G .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2003, 1605 (1-3) :1-13
[7]   Proton-coupled electron transfer [J].
Cukier, RI ;
Nocera, DG .
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 1998, 49 :337-369
[8]  
EHRENBERG A, 1972, J BIOL CHEM, V247, P3485
[9]   Two conserved tyrosine residues in protein R1 participate in an intermolecular electron transfer in ribonucleotide reductase [J].
Ekberg, M ;
Sahlin, M ;
Eriksson, M ;
Sjoberg, BM .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1996, 271 (34) :20655-20659
[10]   Heme/copper terminal oxidases [J].
FergusonMiller, S ;
Babcock, GT .
CHEMICAL REVIEWS, 1996, 96 (07) :2889-2907