Self-energy-limited ion transport in subnanometer channels

被引:59
作者
Bonthuis, Douwe Jan [1 ]
Zhang, Jingshan
Hornblower, Breton
Mathe, Jerome
Shklovskii, Boris I.
Meller, Amit
机构
[1] Boston Univ, Dept Phys, Boston, MA 02215 USA
[2] Boston Univ, Dept Biomed Engn, Boston, MA 02215 USA
[3] Univ Minnesota, William I Fine Theoret Phys Inst, Minneapolis, MN USA
[4] Univ Calif Santa Cruz, Dept Chem & Biochem, Santa Cruz, CA 95060 USA
基金
美国国家科学基金会;
关键词
D O I
10.1103/PhysRevLett.97.128104
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
The current-voltage characteristics of the alpha-Hemolysin protein pore during the passage of single-stranded DNA under varying ionic strength C are studied experimentally. We observe strong blockage of the current, weak superlinear growth of the current as a function of voltage, and a minimum of the current as a function of C. These observations are interpreted as the result of the ion electrostatic self-energy barrier originating from the large difference in the dielectric constants of water and the lipid bilayer. The dependence of DNA capture rate on C also agrees with our model.
引用
收藏
页数:4
相关论文
共 33 条
[1]   Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules [J].
Akeson, M ;
Branton, D ;
Kasianowicz, JJ ;
Brandin, E ;
Deamer, DW .
BIOPHYSICAL JOURNAL, 1999, 77 (06) :3227-3233
[2]   Charged polymer membrane translocation [J].
Ambjörnsson, T ;
Apell, SP ;
Konkoli, Z ;
Di Marzio, EA ;
Kasianowicz, JJ .
JOURNAL OF CHEMICAL PHYSICS, 2002, 117 (08) :4063-4073
[3]   Dynamics of DNA molecules in a membrane channel probed by active control techniques [J].
Bates, M ;
Burns, M ;
Meller, A .
BIOPHYSICAL JOURNAL, 2003, 84 (04) :2366-2372
[4]   What really prevents proton transport through aquaporin? Charge self-energy versus proton wire proposals [J].
Burykin, A ;
Warshel, A .
BIOPHYSICAL JOURNAL, 2003, 85 (06) :3696-3706
[5]   Exploration of the structural features defining the conduction properties of a synthetic ion channel [J].
Dieckmann, GR ;
Lear, JD ;
Zhong, QF ;
Klein, ML ;
DeGrado, WF ;
Sharp, KA .
BIOPHYSICAL JOURNAL, 1999, 76 (02) :618-630
[6]   The structure of the potassium channel:: Molecular basis of K+ conduction and selectivity [J].
Doyle, DA ;
Cabral, JM ;
Pfuetzner, RA ;
Kuo, AL ;
Gulbis, JM ;
Cohen, SL ;
Chait, BT ;
MacKinnon, R .
SCIENCE, 1998, 280 (5360) :69-77
[7]   Comparison of dynamic lattice Monte Carlo simulations and the dielectric self-energy Poisson-Nernst-Planck continuum theory for model ion channels [J].
Graf, P ;
Kurnikova, MG ;
Coalson, RD ;
Nitzan, A .
JOURNAL OF PHYSICAL CHEMISTRY B, 2004, 108 (06) :2006-2015
[8]   Driven DNA transport into an asymmetric nanometer-scale pore [J].
Henrickson, SE ;
Misakian, M ;
Robertson, B ;
Kasianowicz, JJ .
PHYSICAL REVIEW LETTERS, 2000, 85 (14) :3057-3060
[9]   ELECTROSTATIC MODELING OF ION PORES - ENERGY BARRIERS AND ELECTRIC-FIELD PROFILES [J].
JORDAN, PC .
BIOPHYSICAL JOURNAL, 1982, 39 (02) :157-164
[10]   Transport in one-dimensional Coulomb gases: From ion channels to nanopores [J].
Kamenev, A ;
Zhang, J ;
Larkin, AI ;
Shklovskii, BI .
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2006, 359 (129-161) :129-161