High-density Integrated Linkage Map Based on SSR Markers in Soybean

被引：110

作者：

Hwang, Tae-Young ^{[1
,2
]}

Sayama, Takashi ^{[1
]}

Takahashi, Masakazu ^{[3
]}

Takada, Yoshitake ^{[4
]}

Nakamoto, Yumi ^{[1
]}

Funatsuki, Hideyuki ^{[1
]}

Hisano, Hiroshi ^{[5
]}

Sasamoto, Shigemi ^{[5
]}

Sato, Shusei ^{[5
]}

Tabata, Satoshi ^{[5
]}

Kono, Izumi ^{[6
]}

Hoshi, Masako ^{[7
]}

Hanawa, Masayoshi ^{[7
]}

Yano, Chizuru ^{[7
]}

Xia, Zhengjun ^{[8
]}

Harada, Kyuya ^{[8
]}

Kitamura, Keisuke ^{[2
]}

Ishimoto, Masao ^{[1
]}

机构：

[1] Natl Agr Res Ctr Hokkaido Reg, Sapporo, Hokkaido 0628555, Japan

[2] Hokkaido Univ, Grad Sch Agr, Kita Ku, Sapporo, Hokkaido 0608589, Japan

[3] Natl Agr Res Ctr Kyushu Okinawa Reg, Kumamoto 8611192, Japan

[4] Natl Agr Res Ctr Tohoku Reg, Akita 0192112, Japan

[5] Kazusa DNA Res Inst, Chiba 2920818, Japan

[6] Inst Soc Technoinnovat Agr Forestry & Fisheries, Tsukuba, Ibaraki 3050854, Japan

[7] Chiba Univ, Fac Hort, Chiba 2718510, Japan

[8] Natl Inst Agrobiol Sci, Tsukuba, Ibaraki 3058602, Japan

来源：

DNA RESEARCH | 2009年 / 16卷 / 04期

关键词：

EST-derived SSR marker; integrated linkage map; microsatellite marker; polymorphism information content; SEQUENCE REPEAT DNA; LENGTH POLYMORPHISMS; VIRUS-RESISTANCE; GENOME; MICROSATELLITE; RFLP; DIVERSITY; GENE; QTLS; POPULATION;

D O I：

10.1093/dnares/dsp010

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

A well-saturated molecular linkage map is a prerequisite for modern plant breeding. Several genetic maps have been developed for soybean with various types of molecular markers. Simple sequence repeats (SSRs) are single-locus markers with high allelic variation and are widely applicable to different genotypes. We have now mapped 1810 SSR or sequence-tagged site markers in one or more of three recombinant inbred populations of soybean (the US cultivar 'Jack' x the Japanese cultivar 'Fukuyutaka', the Chinese cultivar 'Peking' x the Japanese cultivar 'Akita', and the Japanese cultivar 'Misuzudaizu' x the Chinese breeding line 'Moshidou Gong 503') and have aligned these markers with the 20 consensus linkage groups (LGs). The total length of the integrated linkage map was 2442.9 cM, and the average number of molecular markers was 90.5 (range of 70-114) for the 20 LGs. We examined allelic diversity for 1238 of the SSR markers among 23 soybean cultivars or lines and a wild accession. The number of alleles per locus ranged from 2 to 7, with an average of 2.8. Our high-density linkage map should facilitate ongoing and future genomic research such as analysis of quantitative trait loci and positional cloning in addition to marker-assisted selection in soybean breeding.

引用

页码：213 / 225

页数：13

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