Gene silencing by synthetic U1 Adaptors

被引:47
作者
Goraczniak, Rafal [1 ]
Behlke, Mark A. [2 ]
Gunderson, Samuel I. [1 ]
机构
[1] Rutgers State Univ, Piscataway, NJ 08854 USA
[2] Integrated DNA Technol, Coralville, IA 52241 USA
基金
美国国家卫生研究院;
关键词
PRE-MESSENGER-RNA; LOCKED NUCLEIC-ACIDS; ANTISENSE OLIGONUCLEOTIDES; MAMMALIAN-CELLS; POLY(A) POLYMERASE; MODIFIED SIRNAS; RAF KINASE; IN-VIVO; EXPRESSION; POLYADENYLATION;
D O I
10.1038/nbt.1525
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
We describe a gene silencing method that employs a mechanism of action distinct from those of antisense and RNA interference. U1 Adaptors are bifunctional oligonucleotides with a 'target domain' complementary to a site in the target gene's terminal exon and a 'U1 domain' that binds to the U1 small nuclear RNA component of the U1 small nuclear ribonucleoprotein (U1 snRNP) splicing factor. Tethering of U1 snRNP to the target pre-mRNA inhibits poly(A)-tail addition, causing degradation of that RNA species in the nucleus. U1 Adaptors can inhibit both endogenous and reporter genes in a sequence-specific manner. Comparison of U1 Adaptors with small interfering RNA (siRNA) using a genome-wide microarray analysis indicates that U1 Adaptors have limited off-target effects and no detectable adverse effects on splicing. Further, targeting the same gene either with multiple U1 Adaptors or with a U1 Adaptor and siRNA strongly enhances gene silencing.
引用
收藏
页码:257 / 263
页数:7
相关论文
共 37 条
[1]   Requirements for gene silencing mediated by U1 snRNA binding to a target sequence [J].
Abad, Xabi ;
Vera, Maria ;
Jung, Stephen P. ;
Oswald, Evelyn ;
Romero, Ines ;
Amin, Vaibhav ;
Fortes, Puri ;
Gunderson, Samuel I. .
NUCLEIC ACIDS RESEARCH, 2008, 36 (07) :2338-2352
[2]  
Baserga S., 1993, In The RNA world, P359
[3]   Reduction of target gene expression by a modified U1 snRNA [J].
Beckley, SA ;
Liu, P ;
Stover, ML ;
Gunderson, SI ;
Lichtler, AC ;
Rowe, DW .
MOLECULAR AND CELLULAR BIOLOGY, 2001, 21 (08) :2815-2825
[4]   Antisense strategies [J].
Crooke, ST .
CURRENT MOLECULAR MEDICINE, 2004, 4 (05) :465-487
[5]   3′ end mRNA processing:: molecular mechanisms and implications for health and disease [J].
Danckwardt, Sven ;
Hentze, Matthias W. ;
Kulozik, Andreas E. .
EMBO JOURNAL, 2008, 27 (03) :482-498
[6]   Hydrophobization and bioconjugation for enhanced siRNA delivery and targeting [J].
De Paula, Daniel ;
Bentley, M. Vitoria L. B. ;
Mahato, Ram I. .
RNA, 2007, 13 (04) :431-456
[7]   Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells [J].
Elbashir, SM ;
Harborth, J ;
Lendeckel, W ;
Yalcin, A ;
Weber, K ;
Tuschl, T .
NATURE, 2001, 411 (6836) :494-498
[8]   Inhibiting expression of specific genes in mammalian cells with 5′ end-mutated U1 small nuclear RNAs targeted to terminal exons of pre-mRNA [J].
Fortes, P ;
Cuevas, Y ;
Guan, F ;
Liu, P ;
Pentlicky, S ;
Jung, SP ;
Martínez-Chantar, ML ;
Prieto, J ;
Rowe, D ;
Gunderson, SI .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (14) :8264-8269
[9]   SEQUENCES HOMOLOGOUS TO 5' SPLICE SITES ARE REQUIRED FOR THE INHIBITORY ACTIVITY OF PAPILLOMAVIRUS LATE 3' UNTRANSLATED REGIONS [J].
FURTH, PA ;
CHOE, WT ;
REX, JH ;
BYRNE, JC ;
BAKER, CC .
MOLECULAR AND CELLULAR BIOLOGY, 1994, 14 (08) :5278-5289
[10]   SINGLE-BASE DISCRIMINATION FOR RIBONUCLEASE H-DEPENDENT ANTISENSE EFFECTS WITHIN INTACT HUMAN LEUKEMIA-CELLS [J].
GILES, RV ;
RUDDELL, CJ ;
SPILLER, DG ;
GREEN, JA ;
TIDD, DM .
NUCLEIC ACIDS RESEARCH, 1995, 23 (06) :954-961