Distance criteria for crystal packing analysis of supramolecular motifs

被引:201
作者
Dance, I [1 ]
机构
[1] Univ New S Wales, Sch Chem Sci, Sydney, NSW 2052, Australia
关键词
D O I
10.1039/b206867b
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Supramolecular phenomena are determined by energies, but a different property, geometry, is commonly measured, and abundant data are available. The sum of van der Waals radii, the conventional distance criterion in assessing geometrical data, needs to be related to the relevant intermolecular potential, with cognisance of the chemistry of the molecular surface. The relationship between distance distributions in crystals and the distance scale of the intermolecular potential is evaluated, and the relevant concepts (and mis-concepts) are elaborated. The position of the minimum in the intermolecular potential, that is the most stabilising distance, is ca. 0.4 Angstrom larger than the van der Waals distance. In crystals a small number of destabilising contacts less than the van der Waals distance can be enforced by a much larger number of longer stabilising distances. Crystal packing analyses with cut-offs at the van der Waals distance are likely to miss key supramolecular features.
引用
收藏
页码:22 / 27
页数:6
相关论文
共 41 条
[1]  
Alcock N.W., 1972, ADV INORG CHEM, V15, P1, DOI DOI 10.1016/S0065-2792(08)60016-3
[2]   Applications of the Cambridge Structural Database in organic chemistry and crystal chemistry [J].
Allen, FH ;
Motherwell, WDS .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS, 2002, 58 :407-422
[3]   The Cambridge Structural Database: a quarter of a million crystal structures and rising [J].
Allen, FH .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 (3 PART 1) :380-388
[4]   Natural bond orbital analysis of steric interactions [J].
Badenhoop, JK ;
Weinhold, F .
JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (14) :5406-5421
[5]   VAN DER WAALS VOLUMES + RADII [J].
BONDI, A .
JOURNAL OF PHYSICAL CHEMISTRY, 1964, 68 (03) :441-+
[6]   An ab initio and DFT study of (N2)2 dimers [J].
Couronne, O ;
Ellinger, Y .
CHEMICAL PHYSICS LETTERS, 1999, 306 (1-2) :71-77
[7]  
Dance I., 1996, CRYSTAL SUPRAMOLECUL, V2, P137
[8]  
DANCE IG, UNPUB
[9]  
Desiraju G. R., 1999, The Weak Hydrogen Bond
[10]   Attractions and repulsions in molecular crystals: What can be learned from the crystal structures of condensed ring aromatic hydrocarbons? [J].
Dunitz, JD ;
Gavezzotti, A .
ACCOUNTS OF CHEMICAL RESEARCH, 1999, 32 (08) :677-684