A comparison of chiral separation and analysis of selenomethionine in breast and formula milk, using high performance liquid chromatography (HPLC) on a glycopeptide teicoplanin-based chiral stationary phase (Chirobiotic T), coupled to atomic fluorescence spectrometry (AFS) and inductively coupled plasma (ICP) MS detectors has been performed. The coupling HPLC-microwave-assisted digestion hydride generation requires on-line post-column analytes treatment, and a severe sample clean-up for fat and proteins elimination using centrifugation and ultrafiltration. Underivatized DL-selenomethionine enantiomers were completely resolved in 10 min using unbuffered water mobile phase at 1 ml min(-1) flow. Good selectivity and sensitivities (detection limits 3.1 and 3.5 ng ml(-1) as Se for L- and D-selenomethionine, respectively) were obtained, and method robustness and simplicity, together to the low cost of AFS detector, makes it suitable for infant milk routine analysis. HPLC-ICP-MS coupling exhibits very low detection limits (0.9 ng ml(-1), as Se) for each DL-selenomethionine enantiomers, but the method suffers from matrix influence, that produces a poor S/N ratio and low reliability. The methods were applied to breast and formula milk samples with recoveries of 80% of the total selenium presence, which is attributable to the existence of other unknown species. L-Selenomethionine was the only isomer present in breast milk, but a 30% Of D-selenomethionine was also detected in formula milk. (C) 2004 Elsevier B.V. All rights reserved.