Aerobiosis increases the genomic guanine plus cytosine content (GC%) in prokaryotes

被引:110
作者
Naya, H
Romero, H
Zavala, A
Alvarez, B
Musto, H
机构
[1] Fac Ciencias, Lab Org & Evoluc Genoma, Montevideo 11400, Uruguay
[2] Fac Med, Dept Genet, Montevideo 11800, Uruguay
[3] Fac Ciencias, Lab Enzimol, Montevideo 11400, Uruguay
关键词
genomic G plus C content; prokaryotes; mutational bias; natural selection; reactive oxygen species;
D O I
10.1007/s00239-002-2323-3
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The huge variation in the genomic guanine plus cytosine content (GC%) among prokaryotes has been explained by two mutually exclusive hypotheses, namely, selectionist and neutralist. The former proposals have in common the assumption that this feature is a form of adaptation to some ecological or physiological condition. On the other hand, the neutralist interpretation states that the variations are due only to different mutational biases. Since all of the traits that have been proposed by the selectionists either appeared to be limited to certain genera or were invalidated by the availability of more data, they cannot be considered as a selective force influencing the genomic GC% across all prokaryotes. In this report we show that aerobic prokaryotes display a significant increment in genomic GC% in relation to anaerobic ones. This is the first time that a link between a metabolic character and GC% has been found, independently of phylogenetic relationships and with a statistically significant amount of data.
引用
收藏
页码:260 / 264
页数:5
相关论文
共 21 条
[1]   THERMAL-STABILITY AND PROTEIN-STRUCTURE [J].
ARGOS, P ;
ROSSMANN, MG ;
GRAU, UM ;
ZUBER, H ;
FRANK, G ;
TRATSCHIN, JD .
BIOCHEMISTRY, 1979, 18 (25) :5698-5703
[2]   Oxidative decay of DNA [J].
Beckman, KB ;
Ames, BN .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (32) :19633-19636
[3]   Protein oxidation in aging, disease, and oxidative stress [J].
Berlett, BS ;
Stadtman, ER .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (33) :20313-20316
[4]   REACTIONS OF OXYL RADICALS WITH DNA [J].
BREEN, AP ;
MURPHY, JA .
FREE RADICAL BIOLOGY AND MEDICINE, 1995, 18 (06) :1033-1077
[5]  
CHENG KC, 1992, J BIOL CHEM, V267, P166
[6]   The correlation of protein hydropathy with the base composition of coding sequences [J].
D'Onofrio, G ;
Jabbari, K ;
Musto, H ;
Bernardi, G .
GENE, 1999, 238 (01) :3-14
[7]   Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes [J].
Galtier, N ;
Lobry, JR .
JOURNAL OF MOLECULAR EVOLUTION, 1997, 44 (06) :632-636
[8]   Compositional bias in DNA [J].
Gautier, C .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2000, 10 (06) :656-661
[9]  
Holt G.J., 1994, Bergey's Manual of Determinative Bacteriology
[10]  
LEE KY, 1956, ANN I PASTEUR PARIS, V91, P212