Sequences of 596 cDNA clones (565,977 bp) of Japanese flounder (Paralichthys olivaceus) leukocytes infected with hirame rhabdovirus

被引:45
作者
Aoki, T
Nam, BH
Hirono, I
Yamamoto, E
机构
[1] Tokyo Univ Fisheries, Dept Aquat Biosci, Dept Biochem & Genet, Minato Ku, Tokyo 1088477, Japan
[2] Tottori Prefectural Fisheries Expt Stn, Tottori 6890602, Japan
关键词
Japanese flounder; Paralichthys olivaceus; cDNA; EST; leukocytes;
D O I
10.1007/PL00011804
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
We have partially sequenced 785 sequences of 596 independent complementary DNA clones isolated from a cDNA library of Japanese flounder leukocytes infected with hirame rhabdovirus. These sequences consist of a total of 565,977 base pairs. The average size of the sequenced lengths was 721 bp. Of 596 clones, 386 (64.8%) were identified as previously reported genes by the BLASTN and BLASTX programs. About 30% of the identified clones could be recognized by only the BLASTX program. A total of 251 distinct genes were identified, and 181 of these genes are the first such genes reported from the teleostei. Approximately 27% of the identified Japanese flounder genes appear to be associated with cell division, cell structure or motility, and basic energy metabolism, 29% with gene or protein expression, and 17% with cell signaling, cell communication, and cell or organism defense. The most frequently identified expressed sequence tags of leukocytes of Japanese flounder were gelatinase b and ribosomal protein L23, which both had 1.34% prevalence.
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页码:477 / 488
页数:12
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