The Crystal Structure of Ferritin from Helicobacter pylori Reveals Unusual Conformational Changes for Iron Uptake

被引:79
作者
Cho, Ki Joon [1 ]
Shin, Hye Jeong [2 ]
Lee, Ji-Hye [3 ]
Kim, Kyung-Jin [4 ]
Park, Sarah S. [5 ]
Lee, Youngmi [5 ]
Lee, Cheolju [6 ]
Park, Sung Soo [1 ]
Kim, Kyung Hyun [2 ,7 ]
机构
[1] Korea Univ, Dept Life Sci & Biotechnol, Seoul 136701, South Korea
[2] Korea Univ, Dept Biomicrosyst Technol, Seoul 136701, South Korea
[3] Korea Univ, Dept Food Technol, Seoul 136701, South Korea
[4] Pohang Univ Sci & Technol, Pohang Accelerator Lab, Pohang 790784, Kyungbuk, South Korea
[5] Ewha Womans Univ, Dept Chem & Nanosci, Seoul 120750, South Korea
[6] Korea Inst Sci & Technol, Div Life Sci, Seoul 136791, South Korea
[7] Korea Univ, Dept Biotechnol & Bioinformat, Chungnam 339700, South Korea
关键词
Helicobacter pylori; ferritin; iron uptake mechanism; 4-fold channel; biomineralization; ESCHERICHIA-COLI; AZOTOBACTER-VINELANDII; GASTRIC COLONIZATION; METAL-BINDING; BACTERIOFERRITIN; CHAIN; SITE; FERROXIDASE; APOFERRITIN; MECHANISM;
D O I
10.1016/j.jmb.2009.04.078
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The crystal structure of recombinant ferritin from Helicobacter pylori has been determined in its apo, low-iron-bound, intermediate, and high-iron-bound states. Similar to other members of the ferritin family, the bacterial ferritin assembles as a spherical protein shell of 24 subunits, each of which folds into a four-a-helix bundle. Significant conformational changes were observed at the BC loop and the entrance of the 4-fold symmetry channel in the intermediate and high-iron-bound states, whereas no change was found in the apo and low-iron-bound states. The imidazole rings of His149 at the channel entrance undergo conformational changes that bear resemblance to heme configuration and are directly coupled to axial translocation of Fe ions through the 4-fold channel. Our results provide the first structural evidence of the translocation of Fe ions through the 4-fold channel in prokaryotes and the transition from a protein-dominated process to a mineral-surface-dominated process during biomineralization. (C) 2009 Elsevier Ltd. All rights reserved.
引用
收藏
页码:83 / 98
页数:16
相关论文
共 35 条
[1]   Structural, functional and mutational analysis of the pfr gene encoding a ferritin from Helicobacter pylori [J].
Bereswill, S ;
Waidner, U ;
Odenbreit, S ;
Lichte, F ;
Fassbinder, F ;
Bode, G ;
Kist, M .
MICROBIOLOGY-SGM, 1998, 144 :2505-2516
[2]   Thermodynamic analysis of ferrous ion binding to Escherichia coli ferritin EcFtnA [J].
Bou-Abdallah, F ;
Woodhall, MR ;
Velázquez-Campoy, A ;
Andrews, SC ;
Chasteen, ND .
BIOCHEMISTRY, 2005, 44 (42) :13837-13846
[3]   The putative "nucleation site" in human H-chain ferritin is not required for mineralization of the iron core [J].
Bou-Abdallah, F ;
Biasiotto, G ;
Arosio, P ;
Chasteen, ND .
BIOCHEMISTRY, 2004, 43 (14) :4332-4337
[4]   FREE R-VALUE - A NOVEL STATISTICAL QUANTITY FOR ASSESSING THE ACCURACY OF CRYSTAL-STRUCTURES [J].
BRUNGER, AT .
NATURE, 1992, 355 (6359) :472-475
[5]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[6]   Crystal structure and biochemical properties of the human mitochondrial ferritin and its mutant Ser144Ala [J].
d'Estaintot, BL ;
Paolo, S ;
Granier, T ;
Gallois, B ;
Chevalier, JM ;
Précigoux, G ;
Levi, S ;
Arosio, P .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 340 (02) :277-293
[7]  
DeLano WL., 2002, PYMOL MOL GRAPHICS S
[8]   Recombination and mutation during long-term gastric colonization by Helicobacter pylori:: Estimates of clock rates, recombination size, and minimal age [J].
Falush, D ;
Kraft, C ;
Taylor, NS ;
Correa, P ;
Fox, JG ;
Achtman, M ;
Suerbaum, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (26) :15056-15061
[9]   A short Fe-Fe distance in peroxodiferric ferritin: Control of Fe substrate versus cofactor decay? [J].
Hwang, J ;
Krebs, C ;
Huynh, BH ;
Edmondson, DE ;
Theil, EC ;
Penner-Hahn, JE .
SCIENCE, 2000, 287 (5450) :122-125
[10]   Crystal structures of a tetrahedral open pore ferritin from the hyperthermophilic Archaeon Archaeoglobus fulgidus [J].
Johnson, E ;
Cascio, D ;
Sawaya, MR ;
Gingery, M ;
Schröder, I .
STRUCTURE, 2005, 13 (04) :637-648