An integrated model of glucose and galactose metabolism regulated by the GAL genetic switch

被引:18
作者
Demir, Ozlem
Kurnaz, Isil Aksan
机构
[1] Yeditepe Univ, Dept Genet & Bioengn, TR-34755 Istanbul, Turkey
[2] Bogazici Univ, Dept Mol Biol & Genet, TR-34342 Istanbul, Turkey
关键词
glycolysis; GAL network; galactose metabolism; kinetic modeling; GEPASI;
D O I
10.1016/j.compbiolchem.2006.02.004
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Glucose and galactose are two alternative carbon sources in yeast for energy production, producing CO2 and alcohol. The yeast needs to switch from glucose to galactose metabolism as required, by transcriptional regulation of the respective metabolic enzymes. This regulation is achieved mainly through the GAL genetic switch, in addition to glucose repression mechanism. This study integrates the two metabolic pathways with the genetic regulatory circuit using the GEPASI 3.30 simulation environment, and investigates the model behavior under various nutrient conditions. Our system is successful in achieving transcriptional upregulation of the galactose metabolizing enzymes as required. Under high glucose and high galactose concentrations, the in silico yeast chooses to metabolize glucose first, after which it resorts to using the galactose available. We also show what the preferred storage macromolecules are in different metabolic pathways. (c) 2006 Elsevier Ltd. All rights reserved.
引用
收藏
页码:179 / 192
页数:14
相关论文
共 38 条
[1]   A computer-based model for the regulation of mitogen activated protein kinase (MAPK) activation [J].
Aksan, I ;
Kurnaz, ML .
JOURNAL OF RECEPTORS AND SIGNAL TRANSDUCTION, 2003, 23 (2-3) :197-209
[2]   ERK activation induces phosphorylation of Elk-1 at multiple S/T-P motifs to high stoichiometry [J].
Cruzalegui, FH ;
Cano, E ;
Treisman, R .
ONCOGENE, 1999, 18 (56) :7948-7957
[3]   Glucose uptake kinetics and transcription of HXT genes chemostat cultures of Saccharomyces cerevisiae [J].
Diderich, JA ;
Schepper, M ;
van Hoek, P ;
Luttik, MAH ;
van Dijken, JP ;
Pronk, JT ;
Klaassen, P ;
Boelens, HFM ;
de Mattos, RJT ;
van Dam, K ;
Kruckeberg, AL .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (22) :15350-15359
[4]  
EMIR UE, 2003, SIGN T, V3, P209
[5]   Kinetic and mechanistic analysis of the RNA polymerase II transcription reaction at the human interleukin-2 promoter [J].
Ferguson, HA ;
Kugel, JF ;
Goodrich, JA .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 314 (05) :993-1006
[6]   THE POSTTRANSLATIONAL MODIFICATION OF PHOSPHOGLUCOMUTASE IS REGULATED BY GALACTOSE INDUCTION AND GLUCOSE REPRESSION IN SACCHAROMYCES-CEREVISIAE [J].
FU, LW ;
BOUNELIS, P ;
DEY, N ;
BROWNE, BL ;
MARCHASE, RB ;
BEDWELL, DM .
JOURNAL OF BACTERIOLOGY, 1995, 177 (11) :3087-3094
[7]   A yeast phosphofructokinase insensitive to the allosteric activator fructose 2,6-bisphosphate - Glycolysis metabolic regulation allosteric control [J].
Heinisch, JJ ;
Boles, E ;
Timpel, C .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1996, 271 (27) :15928-15933
[8]  
Hynne R, 2001, BIOPHYS CHEM, V94, P121
[9]   MULTIPLE MECHANISMS PROVIDE RAPID AND STRINGENT GLUCOSE REPRESSION OF GAL GENE-EXPRESSION IN SACCHAROMYCES-CEREVISIAE [J].
JOHNSTON, M ;
FLICK, JS ;
PEXTON, T .
MOLECULAR AND CELLULAR BIOLOGY, 1994, 14 (06) :3834-3841
[10]  
Jonsen MD, 1996, MOL CELL BIOL, V16, P2065