Vibrational stark effects on carbonyl, nitrile, and nitrosyl compounds including heme ligands, CO, CN, and NO, studied with density functional theory

被引:56
作者
Dalosto, SD [1 ]
Vanderkooi, JM [1 ]
Sharp, KA [1 ]
机构
[1] Univ Penn, Sch Med, Dept Biochem & Biophys, Johnson Res Fdn, Philadelphia, PA 19104 USA
关键词
D O I
10.1021/jp0310697
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Changes in the matrix electric field in a protein, due for example to mutations or structural fluctuations, can be correlated with changes in the vibrational transition frequencies of suitable chromophores measured by IR spectroscopy through the Stark tuning rate. To make this correlation, the Stark tuning rate must be known from experiment or theory. In this paper, density functional theory at the B3LYP/TZV level of theory is used to compute the Stark tuning rate of adducts of heme porphyrin, namely, -CO, -CN, and -NO+ compounds. The results are compared with the corresponding vibrational frequencies-field dependencies from vibrational Stark spectroscopy of heme-proteins. The zero-field computed Stark tuning rate of 1.3 cm(-1)/MV/cm for heme-CO is in agreement with experiment, where typically the rate is 2.4/f cm(-1)/MV/cm for myoglobin, where f is a local field correction between 1.1 and 1.4. Several small nitrile, carbonyl, and dinitrile molecules were studied to rationalize the findings for the heme-adducted models. Here, the higher B3LYP/6-311++G-(2d,2p) level of theory could be used so the agreement with recent experimental results is even better than for heme-adducted groups.
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收藏
页码:6450 / 6457
页数:8
相关论文
共 49 条
[1]   Exchange functionals with improved long-range behavior and adiabatic connection methods without adjustable parameters:: The mPW and mPW1PW models [J].
Adamo, C ;
Barone, V .
JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (02) :664-675
[2]   FTIR investigation of the conformational properties of the cyanide bound human hemoglobin [J].
Al-Mustafa, JI .
VIBRATIONAL SPECTROSCOPY, 2002, 30 (02) :139-146
[3]  
ALMUSTAFA JI, 2002, VIB SPECTROSC, V951, P1
[4]   Vibrational Stark effects of nitriles II. Physical origins of stark effects from experiment and perturbation models [J].
Andrews, SS ;
Boxer, SG .
JOURNAL OF PHYSICAL CHEMISTRY A, 2002, 106 (03) :469-477
[5]   Vibrational stark effects of nitriles I. Methods and experimental results [J].
Andrews, SS ;
Boxer, SG .
JOURNAL OF PHYSICAL CHEMISTRY A, 2000, 104 (51) :11853-11863
[6]   ELECTRIC-FIELD AND CONFORMATIONAL EFFECTS OF CYTOCHROME-C AND SOLVENT ON CYTOCHROME-C PEROXIDASE STUDIED BY HIGH-RESOLUTION FLUORESCENCE SPECTROSCOPY [J].
ANNI, H ;
VANDERKOOI, JM ;
SHARP, KA ;
YONETANI, T ;
HOPKINS, SC ;
HERENYI, L ;
FIDY, J .
BIOCHEMISTRY, 1994, 33 (12) :3475-3486
[7]   THE EFFECT OF AN EXTERNAL ELECTRIC-FIELD ON THE VIBRATIONAL FREQUENCY OF CO [J].
BAUSCHLICHER, CW .
CHEMICAL PHYSICS LETTERS, 1985, 118 (03) :307-310
[8]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[9]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[10]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100