The nucleosome: A transparent, slippery, sticky and yet stable DNA-protein complex

被引:43
作者
Schiessel, H. [1 ]
机构
[1] Leiden Univ, Inst Lorentz, NL-2300 RA Leiden, Netherlands
关键词
D O I
10.1140/epje/i2005-10049-y
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Roughly three quarters of eucaryotic DNA are tightly wrapped onto protein cylinders organized in so-called nucleosomes. Despite this fact, the wrapped DNA cannot be inert since DNA is at the heart of many crucial life processes. We focus here on physical mechanisms that might allow nucleosomes to perform a great deal of such processes, specifically 1) on unwrapping fluctuations that give DNA-binding proteins access to the wrapped DNA portions with out disrupting the nucleosome as a whole, 2) on corkscrew sliding along DNA and some implications and on 3) tail-bridging-induced attraction between nucleosomes as a means of controlling higher-order folding.
引用
收藏
页码:251 / 262
页数:12
相关论文
共 70 条
[1]   Nonmonotonic variation with salt concentration of the second virial coefficient in protein solutions -: art. no. 051404 [J].
Allahyarov, E ;
Löwen, H ;
Hansen, JP ;
Louis, AA .
PHYSICAL REVIEW E, 2003, 67 (05) :13
[2]   Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites [J].
Anderson, JD ;
Widom, J .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 296 (04) :979-987
[3]   A theoretical model for the prediction of sequence-dependent nucleosome thermodynamic stability [J].
Anselmi, C ;
Bocchinfuso, G ;
De Santis, P ;
Savino, M ;
Scipioni, A .
BIOPHYSICAL JOURNAL, 2000, 79 (02) :601-613
[4]   Nucleosome sliding: facts and fiction [J].
Becker, PB .
EMBO JOURNAL, 2002, 21 (18) :4749-4753
[5]   The nature of the nucleosomal barrier to transcription: Direct observation of paused intermediates by electron cryomicroscopy [J].
Bednar, J ;
Studitsky, VM ;
Grigoryev, SA ;
Felsenfeld, O ;
Woodcock, CL .
MOLECULAR CELL, 1999, 4 (03) :377-386
[6]   Unfolding individual nucleosomes by stretching single chromatin fibers with optical tweezers [J].
Bennink, ML ;
Leuba, SH ;
Leno, GH ;
Zlatanova, J ;
de Grooth, BG ;
Greve, J .
NATURE STRUCTURAL BIOLOGY, 2001, 8 (07) :606-610
[7]   Role of histone tails in the conformation and interactions of nucleosome core particles [J].
Bertin, A ;
Leforestier, A ;
Durand, D ;
Livolant, F .
BIOCHEMISTRY, 2004, 43 (16) :4773-4780
[8]   Interactions between polyelectrolyte-macroion complexes [J].
Boroudjerdi, H ;
Netz, RR .
EUROPHYSICS LETTERS, 2003, 64 (03) :413-419
[9]   Strongly coupled polyelectrolyte-macroion complexes [J].
Boroudjerdi, H ;
Netz, RR .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2005, 17 (14) :S1137-S1151
[10]   Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes [J].
Brower-Toland, B ;
Wacker, DA ;
Fulbright, RM ;
Lis, JT ;
Kraus, WL ;
Wang, MD .
JOURNAL OF MOLECULAR BIOLOGY, 2005, 346 (01) :135-146