A novel endonuclease mechanism directly visualized for I-Ppol

被引:103
作者
Galburt, EA
Chevalier, B
Tang, WL
Jurica, MS
Flick, KE
Monnat, RJ
Stoddard, BL
机构
[1] Univ Washington, Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA
[2] Univ Washington, Grad Program Biomol Struct & Design, Seattle, WA 98109 USA
[3] Univ Washington, Dept Pathol, Seattle, WA 98195 USA
关键词
D O I
10.1038/70027
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A novel mechanism of DNA endonucleolytic cleavage has been visualized for the homing endonuclease I-PpoI by trapping the uncleaved enzyme-substrate complex and comparing it to the previously visualized product complex,This enzyme employs a unique single metal mechanism, A magnesium ion is coordinated by an asparagine residue and two DNA oxygen atoms and stabilizes the phosphoanion transition state and the 3'oxygen having group. A hydrolytic water molecule is activated by a histidine residue for an in-line attack on the scissile phosphate. A strained enzyme-substrate-metal complex is formed before mechanism directly cleavage, then relaxed during the reaction.
引用
收藏
页码:1096 / 1099
页数:4
相关论文
共 29 条
[1]   Novel site-specific DNA endonucleases [J].
Aggarwal, AK ;
Wah, DA .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1998, 8 (01) :19-25
[2]  
[Anonymous], [No title captured]
[3]   DNA cleavage by the EcoRV restriction endonuclease:: Roles of divalent metal ions in specificity and catalysis [J].
Baldwin, GS ;
Sessions, RB ;
Erskine, SG ;
Halford, SE .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 288 (01) :87-103
[4]   PROKARYOTIC INTRONS AND INTEINS - A PANOPLY OF FORM AND FUNCTION [J].
BELFORT, M ;
REABAN, ME ;
COETZEE, T ;
DALGAARD, JZ .
JOURNAL OF BACTERIOLOGY, 1995, 177 (14) :3897-3903
[5]   Mechanisms of intron mobility [J].
Belfort, M ;
Perlman, PS .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1995, 270 (51) :30237-30240
[6]   Homing endonucleases: keeping the house in order [J].
Belfort, M ;
Roberts, RJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3379-3388
[7]   ASSESSMENT OF PHASE ACCURACY BY CROSS VALIDATION - THE FREE R-VALUE - METHODS AND APPLICATIONS [J].
BRUNGER, AT .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1993, 49 :24-36
[8]  
COTTON FA, 1980, ADV INORG CHEM RAD, P253
[9]   Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family [J].
Dalgaard, JZ ;
Klar, AJ ;
Moser, MJ ;
Holley, WR ;
Chatterjee, A ;
Mian, IS .
NUCLEIC ACIDS RESEARCH, 1997, 25 (22) :4626-4638
[10]   Crystal structure of PI-Scel, a homing endonuclease with protein splicing activity [J].
Duan, XQ ;
Gimble, FS ;
Quiocho, FA .
CELL, 1997, 89 (04) :555-564