Methyl groups as probes for proteins and complexes in in-cell NMR experiments

被引:75
作者
Serber, Z
Straub, W
Corsini, L
Nomura, AM
Shimba, N
Craik, CS
de Montellano, PO
Dötsch, V [1 ]
机构
[1] Univ Calif San Francisco, Grad Grp Biophys, San Francisco, CA 94143 USA
[2] Univ Calif San Francisco, Grad Program Chem & Chem Biol, San Francisco, CA 94143 USA
[3] Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
[4] Univ Frankfurt, Inst Biophys Chem, D-60439 Frankfurt, Germany
[5] Univ Frankfurt, Ctr Biomol Magnet Resonance, D-60439 Frankfurt, Germany
关键词
D O I
10.1021/ja049977k
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Studying protein components of large intracellular complexes by in-cell NMR has so far been impossible because the backbone resonances are unobservable due to their slow tumbling rates. We describe a methodology that overcomes this difficulty through selective labeling of methyl groups, which possess more favorable relaxation behavior. Comparison of different in-cell labeling schemes with three different proteins, calmodulin, NmerA, and FKBP, shows that selective labeling with [(13)C]methyl groups on methionine and alanine provides excellent sensitivity with low background levels at very low costs.
引用
收藏
页码:7119 / 7125
页数:7
相关论文
共 24 条
[1]   PROTEIN EXPRESSION, SELECTIVE ISOTOPIC LABELING, AND ANALYSIS OF HYPERFINE-SHIFTED NMR SIGNALS OF ANABAENA-7120 VEGETATIVE [2FE-2S]FERREDOXIN [J].
CHENG, H ;
WESTLER, WM ;
XIA, B ;
OH, BH ;
MARKLEY, JL .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1995, 316 (01) :619-634
[2]   FlgM gains structure in living cells [J].
Dedmon, MM ;
Patel, CN ;
Young, GB ;
Pielak, GJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (20) :12681-12684
[3]   A robust and cost-effective method for the production of Val, Leu, Ile (δ1) methyl-protonated 15N-, 13C-, 2H-labeled proteins [J].
Goto, NK ;
Gardner, KH ;
Mueller, GA ;
Willis, RC ;
Kay, LE .
JOURNAL OF BIOMOLECULAR NMR, 1999, 13 (04) :369-374
[4]   NMR-based screening of proteins containing 13C-labeled methyl groups [J].
Hajduk, PJ ;
Augeri, DJ ;
Mack, J ;
Mendoza, R ;
Yang, JG ;
Betz, SF ;
Fesik, SW .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (33) :7898-7904
[5]   Nuclear magnetic resonance spectroscopy reveals the functional state of the signalling protein CheY in vivo in Escherichia coli [J].
Hubbard, JA ;
MacLachlan, LK ;
King, GW ;
Jones, JJ ;
Fosberry, AP .
MOLECULAR MICROBIOLOGY, 2003, 49 (05) :1191-1200
[6]   A NOVEL-APPROACH FOR SEQUENTIAL ASSIGNMENT OF H-1, C-13, AND N-15 SPECTRA OF LARGER PROTEINS - HETERONUCLEAR TRIPLE-RESONANCE 3-DIMENSIONAL NMR-SPECTROSCOPY - APPLICATION TO CALMODULIN [J].
IKURA, M ;
KAY, LE ;
BAX, A .
BIOCHEMISTRY, 1990, 29 (19) :4659-4667
[7]   THE EFFECTS OF DIPOLAR CROSS-CORRELATION ON C-13 METHYL-CARBON T1, T2, AND NOE MEASUREMENTS IN MACROMOLECULES [J].
KAY, LE ;
TORCHIA, DA .
JOURNAL OF MAGNETIC RESONANCE, 1991, 95 (03) :536-547
[8]  
Lippens G, 1999, NATO ADV SCI I C-MAT, V526, P191
[9]  
MATTHEWS RG, 1996, ESCHERICHIA COLI SAL, V1, P600
[10]   SOLUTION STRUCTURE OF FKBP, A ROTAMASE ENZYME AND RECEPTOR FOR FK506 AND RAPAMYCIN [J].
MICHNICK, SW ;
ROSEN, MK ;
WANDLESS, TJ ;
KARPLUS, M ;
SCHREIBER, SL .
SCIENCE, 1991, 252 (5007) :836-839