The solution structure of monomeric CCL5 in complex with a doubly sulfated N-terminal segment of CCR5

被引:36
作者
Abayev, Meital [1 ]
Rodrigues, Joao P. G. L. M. [2 ]
Srivastava, Gautam [1 ]
Arshava, Boris [3 ,4 ,5 ,6 ]
Jaremko, Lukasz [7 ]
Jaremko, Mariusz [7 ]
Naider, Fred [3 ,4 ,5 ,6 ]
Levitt, Michael [2 ]
Anglister, Jacob [1 ]
机构
[1] Weizmann Inst Sci, Dept Biol Struct, IL-76100 Rehovot, Israel
[2] Stanford Univ, Sch Med, Dept Struct Biol, Stanford, CA 94305 USA
[3] CUNY Coll Staten Isl, Dept Chem, Staten Isl, NY 10301 USA
[4] CUNY Coll Staten Isl, Macromol Assembly Inst, Staten Isl, NY USA
[5] CUNY, PhD Program Biochem, New York, NY 10021 USA
[6] CUNY, PhD Program Chem, New York, NY 10021 USA
[7] Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, Gottingen, Germany
基金
美国国家卫生研究院;
关键词
chemokine receptors; chemokines; intermolecular interactions; NMR; protein complexes; proteins; sulfated tyrosine; TRNOE; CHEMOKINE RECOGNITION; TYROSINE SULFATION; PROTEIN STRUCTURES; CRYSTAL-STRUCTURE; CHEMICAL-SHIFT; HIV-1; GP120; RANTES; POTENT; IDENTIFICATION; REQUIREMENTS;
D O I
10.1111/febs.14460
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
The inflammatory chemokine CCL5, which binds the chemokine receptor CCR5 in a two-step mechanism so as to activate signaling pathways in hematopoetic cells, plays an important role in immune surveillance, inflammation, and development as well as in several immune system pathologies. The recently published crystal structure of CCR5 bound to a high-affinity variant of CCL5 lacks the N-terminal segment of the receptor that is post-translationally sulfated and is known to be important for high-affinity binding. Here, we report the NMR solution structure of monomeric CCL5 bound to a synthetic doubly sulfated peptide corresponding to the missing first 27 residues of CCR5. Our structures show that two sulfated tyrosine residues, sY10 and sY14, as well as the unsulfated Y15 form a network of strong interactions with a groove on a surface of CCL5 that is formed from evolutionarily conserved basic and hydrophobic amino acids. We then use our NMR structures, in combination with available crystal data, to create an atomic model of full-length wild-type CCR5:CCL5. Our findings reveal the structural determinants involved in the recognition of CCL5 by the CCR5 N terminus. These findings, together with existing structural data, provide a complete structural framework with which to understand the specificity of receptor:chemokine interactions. DatabaseStructural data are available in the PDB under the accession number
引用
收藏
页码:1988 / 2003
页数:16
相关论文
共 50 条
[1]
Detection of intermolecular transferred-NOE interactions in small and medium size protein complexes: RANTES complexed with a CCR5 N-terminal peptide [J].
Abayev, Meital ;
Srivastava, Gautam ;
Arshava, Boris ;
Naider, Fred ;
Anglister, Jacob .
FEBS JOURNAL, 2017, 284 (04) :586-601
[2]
Apweiler R, 2004, NUCLEIC ACIDS RES, V32, pD115, DOI [10.1093/nar/gkh131, 10.1093/nar/gkw1099]
[3]
Sialylated O-glycans and sulfated tyrosines in the NH2-terminal domain of CC chemokine receptor 5 contribute to high affinity binding of chemokines [J].
Bannert, N ;
Craig, S ;
Farzan, M ;
Sogah, D ;
Santo, NV ;
Choe, H ;
Sodroski, J .
JOURNAL OF EXPERIMENTAL MEDICINE, 2001, 194 (11) :1661-1673
[4]
Structural basis for chemokine recognition and activation of a viral G protein-coupled receptor [J].
Burg, John S. ;
Ingram, Jessica R. ;
Venkatakrishnan, A. J. ;
Jude, Kevin M. ;
Dukkipati, Abhiram ;
Feinberg, Evan N. ;
Angelini, Alessandro ;
Waghray, Deepa ;
Dror, Ron O. ;
Ploegh, Hidde L. ;
Garcia, K. Christopher .
SCIENCE, 2015, 347 (6226) :1113-1117
[5]
THE 3-DIMENSIONAL SOLUTION STRUCTURE OF RANTES [J].
CHUNG, CW ;
COOKE, RM ;
PROUDFOOT, AEI ;
WELLS, TNC .
BIOCHEMISTRY, 1995, 34 (29) :9307-9314
[6]
Biopython']python: freely available Python']Python tools for computational molecular biology and bioinformatics [J].
Cock, Peter J. A. ;
Antao, Tiago ;
Chang, Jeffrey T. ;
Chapman, Brad A. ;
Cox, Cymon J. ;
Dalke, Andrew ;
Friedberg, Iddo ;
Hamelryck, Thomas ;
Kauff, Frank ;
Wilczynski, Bartek ;
de Hoon, Michiel J. L. .
BIOINFORMATICS, 2009, 25 (11) :1422-1423
[7]
HIV-1 exploits CCR5 conformational heterogeneity to escape inhibition by chemokines [J].
Colin, Philippe ;
Benureau, Yann ;
Staropoli, Isabelle ;
Wang, Yongjin ;
Gonzalez, Nuria ;
Alcami, Jose ;
Hartley, Oliver ;
Brelot, Anne ;
Arenzana-Seisdedos, Fernando ;
Lagane, Bernard .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (23) :9475-9480
[8]
Solution structure and basis for functional activity of stromal cell-derived factor-1; dissociation of CXCR4 activation from binding and inhibition of HIV-1 [J].
Crump, MP ;
Gong, JH ;
Loetscher, P ;
Rajarathnam, K ;
Amara, A ;
Arenzana-Seisdedos, F ;
Virelizier, JL ;
Baggiolini, M ;
Sykes, BD ;
Clark-Lewis, I .
EMBO JOURNAL, 1997, 16 (23) :6996-7007
[9]
Identification of amino acid residues critical for aggregation of human CC chemokines macrophage inflammatory protein (MIP)-1α, MIP-1β, and RANTES -: Characterization of active disaggregated chemokine variants [J].
Czaplewski, LG ;
McKeating, J ;
Craven, CJ ;
Higgins, LD ;
Appay, V ;
Brown, A ;
Dudgeon, T ;
Howard, LA ;
Meyers, T ;
Owen, J ;
Palan, SR ;
Tan, P ;
Wilson, G ;
Woods, NR ;
Heyworth, CM ;
Lord, BI ;
Brotherton, D ;
Christison, R ;
Craig, S ;
Cribbes, S ;
Edwards, RM ;
Evans, SJ ;
Gilbert, R ;
Morgan, P ;
Randle, E ;
Schofield, N ;
Varley, PG ;
Fisher, J ;
Waltho, JP ;
Hunter, MG .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (23) :16077-16084
[10]
Recognition of RANTES by extracellular parts of the CCR5 receptor [J].
Duma, Luminita ;
Haeussinger, Daniel ;
Rogowski, Marco ;
Lusso, Paolo ;
Grzesiek, Stephan .
JOURNAL OF MOLECULAR BIOLOGY, 2007, 365 (04) :1063-1075