Expansion of genome coding regions by acquisition of new genes

被引:41
作者
Betrán, E [1 ]
Long, MY [1 ]
机构
[1] Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA
关键词
new genes; G-value paradox; natural selection;
D O I
10.1023/A:1016024131097
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
As it is the case for non-coding regions, the coding regions of organisms can be expanded or shrunk during evolutionary processes. However, the dynamics of coding regions are expected to be more correlated with functional complexity and diversity than are the dynamics of non-coding regions. Hence, it is interesting to investigate the increase of diversity in coding regions - the origin and evolution of new genes - because this provides a new component to the genetic variation underlying the diversity of living organisms. Here, we examine what is known about the mechanisms responsible for the increase in gene number. Every mechanism affects genomes in a distinct way and to a different extent and it appears that certain organisms favor particular mechanisms. The detail of some interesting gene acquisitions reveals the extreme dynamism of genomes. Finally, we discuss what is known about the fate of new genes and conclude that many of the acquisitions are likely to have been driven by natural selection; they increase functional complexity, diversity, and/or adaptation of species. Despite this, the correlation between complexity of life and gene number is low and closely related species (with very similar life histories) can have very different number of genes. We call this phenomenon the G-value paradox.
引用
收藏
页码:65 / 80
页数:16
相关论文
共 141 条
[1]   The genome sequence of Drosophila melanogaster [J].
Adams, MD ;
Celniker, SE ;
Holt, RA ;
Evans, CA ;
Gocayne, JD ;
Amanatides, PG ;
Scherer, SE ;
Li, PW ;
Hoskins, RA ;
Galle, RF ;
George, RA ;
Lewis, SE ;
Richards, S ;
Ashburner, M ;
Henderson, SN ;
Sutton, GG ;
Wortman, JR ;
Yandell, MD ;
Zhang, Q ;
Chen, LX ;
Brandon, RC ;
Rogers, YHC ;
Blazej, RG ;
Champe, M ;
Pfeiffer, BD ;
Wan, KH ;
Doyle, C ;
Baxter, EG ;
Helt, G ;
Nelson, CR ;
Miklos, GLG ;
Abril, JF ;
Agbayani, A ;
An, HJ ;
Andrews-Pfannkoch, C ;
Baldwin, D ;
Ballew, RM ;
Basu, A ;
Baxendale, J ;
Bayraktaroglu, L ;
Beasley, EM ;
Beeson, KY ;
Benos, PV ;
Berman, BP ;
Bhandari, D ;
Bolshakov, S ;
Borkova, D ;
Botchan, MR ;
Bouck, J ;
Brokstein, P .
SCIENCE, 2000, 287 (5461) :2185-2195
[2]   ANALYSIS OF NUCLEOTIDE SUBSTITUTIONS AND AMINO-ACID CONSERVATION IN THE DROSOPHILA ADH GENOMIC REGION [J].
ALBALAT, R ;
MARFANY, G ;
GONZALEZDUARTE, R .
GENETICA, 1994, 94 (01) :27-36
[3]   Lineage-specific loss and divergence of functionally linked genes in eukaryotes [J].
Aravind, L ;
Watanabe, H ;
Lipman, DJ ;
Koonin, EV .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (21) :11319-11324
[4]  
Ashburner M, 1998, BIOESSAYS, V20, P949, DOI 10.1002/(SICI)1521-1878(199811)20:11&lt
[5]  
949::AID-BIES10&gt
[6]  
3.0.CO
[7]  
2-0
[8]   ZFA IS AN EXPRESSED RETROPOSON DERIVED FROM AN ALTERNATIVE TRANSCRIPT OF THE ZFX GENE [J].
ASHWORTH, A ;
SKENE, B ;
SWIFT, S ;
LOVELLBADGE, R .
EMBO JOURNAL, 1990, 9 (05) :1529-1534
[9]   Genome comparisons highlight similarity and diversity within the eukaryotic kingdoms [J].
Ball, CA ;
Cherry, JM .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2001, 5 (01) :86-89
[10]   Duplicate and diverge: the evolution of plant genome microstructure [J].
Bancroft, I .
TRENDS IN GENETICS, 2001, 17 (02) :89-93