A perspective on proteomics in cell biology

被引:50
作者
Ahmad, Yasmeen [1 ]
Lamond, Angus I. [1 ]
机构
[1] Univ Dundee, Coll Life Sci, Ctr Gene Regulat & Express, Dundee DD1 5EH, Scotland
关键词
COMPLEX PROTEIN MIXTURES; MASS-SPECTROMETRY; ABSOLUTE QUANTIFICATION; IDENTIFICATION; TANDEM; QUANTITATION; ACCURATE; EXPRESSION; THROUGHPUT; STRATEGY;
D O I
10.1016/j.tcb.2013.10.010
中图分类号
Q2 [细胞生物学];
学科分类号
071013 [干细胞生物学];
摘要
During the past 15 years mass spectrometry (MS)-based analyses have become established as the method of choice for direct protein identification and measurement. Owing to the remarkable improvements in the sensitivity and resolution of MS instruments, this technology has revolutionised the opportunities available for the system-wide characterisation of proteins, with wide applications across virtually the whole of cell biology. In this article we provide a perspective on the current state of the art and discuss how the future of cell biology research may benefit from further developments and applications in the field of MS and proteomics, highlighting the major challenges ahead for the community in organising the effective sharing and integration of the resulting data mountain.
引用
收藏
页码:257 / 264
页数:8
相关论文
共 46 条
[1]
Nucleolar proteome dynamics [J].
Andersen, JS ;
Lam, YW ;
Leung, AKL ;
Ong, SE ;
Lyon, CE ;
Lamond, AI ;
Mann, M .
NATURE, 2005, 433 (7021) :77-83
[2]
Andersen JS, 2002, CURR BIOL, V12, P1, DOI 10.1016/S0960-9822(01)00650-9
[3]
Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides [J].
Beynon, RJ ;
Doherty, MK ;
Pratt, JM ;
Gaskell, SJ .
NATURE METHODS, 2005, 2 (08) :587-589
[4]
A Quantitative Spatial Proteomics Analysis of Proteome Turnover in Human Cells [J].
Boisvert, Francois-Michel ;
Ahmad, Yasmeen ;
Gierlinski, Marek ;
Charriere, Fabien ;
Lamont, Douglas ;
Scott, Michelle ;
Barton, Geoff ;
Lamond, Angus I. .
MOLECULAR & CELLULAR PROTEOMICS, 2012, 11 (03)
[5]
Establishment of a Protein Frequency Library and Its Application in the Reliable Identification of Specific Protein Interaction Partners [J].
Boulon, Severine ;
Ahmad, Yasmeen ;
Trinkle-Mulcahy, Laura ;
Verheggen, Celine ;
Cobley, Andy ;
Gregor, Peter ;
Bertrand, Edouard ;
Whitehorn, Mark ;
Lamond, Angus I. .
MOLECULAR & CELLULAR PROTEOMICS, 2010, 9 (05) :861-879
[6]
Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment [J].
Cox, Juergen ;
Neuhauser, Nadin ;
Michalski, Annette ;
Scheltema, Richard A. ;
Olsen, Jesper V. ;
Mann, Matthias .
JOURNAL OF PROTEOME RESEARCH, 2011, 10 (04) :1794-1805
[7]
TANDEM: matching proteins with tandem mass spectra [J].
Craig, R ;
Beavis, RC .
BIOINFORMATICS, 2004, 20 (09) :1466-1467
[8]
AN APPROACH TO CORRELATE TANDEM MASS-SPECTRAL DATA OF PEPTIDES WITH AMINO-ACID-SEQUENCES IN A PROTEIN DATABASE [J].
ENG, JK ;
MCCORMACK, AL ;
YATES, JR .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 1994, 5 (11) :976-989
[9]
Increasing Throughput in Targeted Proteomics Assays: 54-Plex Quantitation in a Single Mass Spectrometry Run [J].
Everley, Robert A. ;
Kunz, Ryan C. ;
McAllister, Fiona E. ;
Gygi, Steven P. .
ANALYTICAL CHEMISTRY, 2013, 85 (11) :5340-5346
[10]
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS [J].
Gerber, SA ;
Rush, J ;
Stemman, O ;
Kirschner, MW ;
Gygi, SP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (12) :6940-6945