Progress toward chemical accuracy in the computer simulation of condensed phase reactions

被引:92
作者
Bash, PA
Ho, LL
MacKerell, AD
Levine, D
Hallstrom, P
机构
[1] YALE UNIV,DEPT PHYS,JW GIBBS LAB,NEW HAVEN,CT 06511
[2] ARGONNE NATL LAB,DIV MATH & COMP SCI,ARGONNE,IL 60439
[3] UNIV MARYLAND,SCH PHARM,DEPT PHARMACEUT SCI,BALTIMORE,MD 21230
关键词
D O I
10.1073/pnas.93.8.3698
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We describe a procedure for the generation of chemically accurate computer-simulation models to study chemical reactions in the condensed phase, The process involves (i) the use of a coupled semiempirical quantum and classical molecular mechanics method to represent solutes and solvent, respectively; (ii) the optimization of semiempirical quantum mechanics (QM) parameters to produce a computationally efficient and chemically accurate QM model; (iii) the calibration of a quantum/classical microsolvation model using nb initio quantum theory; and (iv) the use of statistical mechanical principles and methods to simulate, on massively parallel computers, the thermodynamic properties of chemical reactions in aqueous solution, The utility of this process is demonstrated by the calculation of the enthalpy of reaction in vacuum and free energy change in aqueous solution for a proton transfer involving methanol, methoxide, imidazole, and imidazolium, which are functional groups involved with proton transfers in many biochemical systems, An optimized semiempirical QM model is produced, which results in the calculation of heats of formation of the above chemical species to within 1.0 kcal/mol (1 kcal = 4.18 kJ) of experimental values, The use of the calibrated QM and microsolvation QM/MM (molecular mechanics) models for the simulation of a proton transfer in aqueous solution gives a calculated free energy that is within 1.0 kcal/mol (12.2 calculated vs, 12.8 experimental) of a value estimated from experimental pKa values of the reacting species.
引用
收藏
页码:3698 / 3703
页数:6
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