Progress in TILLING as a tool for functional genomics and improvement of crops

被引:56
作者
Chen, Liang [1 ,2 ]
Hao, Liugen [1 ,2 ]
Parry, Martin A. J. [3 ]
Phillips, Andrew L. [3 ]
Hu, Yin-Gang [1 ,2 ,4 ]
机构
[1] Northwest A&F Univ, State Key Lab Crop Stress Biol Arid Areas, Yangling 712100, Shaanxi, Peoples R China
[2] Northwest A&F Univ, Coll Agron, Yangling 712100, Shaanxi, Peoples R China
[3] Rothamsted Res, Dept Plant Biol & Crop Sci, Harpenden AL5 2JQ, Herts, England
[4] Northwest A&F Univ, Inst Water Saving Agr Arid Reg China, Yangling 712100, Shaanxi, Peoples R China
基金
英国生物技术与生命科学研究理事会;
关键词
Crop breeding; functional genomics; mutation detection; TILLING; NUCLEOTIDE POLYMORPHISM DISCOVERY; CHEMICALLY-INDUCED MUTATIONS; RESOLUTION MELTING ANALYSIS; DETECT INDUCED MUTATIONS; INDUCED POINT MUTATIONS; REVERSE GENETICS TOOL; INSERTIONAL MUTAGENESIS; MUTANT POPULATION; ALLELIC VARIANTS; GENES;
D O I
10.1111/jipb.12192
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Food security is a global concern and substantial yield increases in crops are required to feed the growing world population. Mutagenesis is an important tool in crop improvement and is free of the regulatory restrictions imposed on genetically modified organisms. Targeting Induced Local Lesions in Genomes (TILLING), which combines traditional chemical mutagenesis with high-throughput genome-wide screening for point mutations in desired genes, offers a powerful way to create novel mutant alleles for both functional genomics and improvement of crops. TILLING is generally applicable to genomes whether small or large, diploid or even allohexaploid, and shows great potential to address the major challenge of linking sequence information to the function of genes and to modulate key traits for plant breeding. TILLING has been successfully applied in many crop species and recent progress in TILLING is summarized below, especially on the developments in mutation detection technology, application of TILLING in gene functional studies and crop breeding. The potential of TILLING/EcoTILLING for functional genetics and crop improvement is also discussed. Furthermore, a small-scale forward strategy including backcross and selfing was conducted to release the potential mutant phenotypes masked in M-2 (orM(3)) plants.
引用
收藏
页码:425 / 443
页数:19
相关论文
共 118 条
[1]   Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.) [J].
Allen, Alexandra M. ;
Barker, Gary L. A. ;
Berry, Simon T. ;
Coghill, Jane A. ;
Gwilliam, Rhian ;
Kirby, Susan ;
Robinson, Phil ;
Brenchley, Rachel C. ;
D'Amore, Rosalinda ;
McKenzie, Neil ;
Waite, Darren ;
Hall, Anthony ;
Bevan, Michael ;
Hall, Neil ;
Edwards, Keith J. .
PLANT BIOTECHNOLOGY JOURNAL, 2011, 9 (09) :1086-1099
[2]   Genome-wide Insertional mutagenesis of Arabidopsis thaliana [J].
Alonso, JM ;
Stepanova, AN ;
Leisse, TJ ;
Kim, CJ ;
Chen, HM ;
Shinn, P ;
Stevenson, DK ;
Zimmerman, J ;
Barajas, P ;
Cheuk, R ;
Gadrinab, C ;
Heller, C ;
Jeske, A ;
Koesema, E ;
Meyers, CC ;
Parker, H ;
Prednis, L ;
Ansari, Y ;
Choy, N ;
Deen, H ;
Geralt, M ;
Hazari, N ;
Hom, E ;
Karnes, M ;
Mulholland, C ;
Ndubaku, R ;
Schmidt, I ;
Guzman, P ;
Aguilar-Henonin, L ;
Schmid, M ;
Weigel, D ;
Carter, DE ;
Marchand, T ;
Risseeuw, E ;
Brogden, D ;
Zeko, A ;
Crosby, WL ;
Berry, CC ;
Ecker, JR .
SCIENCE, 2003, 301 (5633) :653-657
[3]  
[Anonymous], 11 INT WHEAT GEN S P
[4]  
[Anonymous], THESIS KANSAS STATE
[5]  
[Anonymous], PLANT AN GEN 21 C
[6]   A combined biochemical screen and TILLING approach identifies mutations in Sorghum bicolor L. Moench resulting in acyanogenic forage production [J].
Blomstedt, Cecilia K. ;
Gleadow, Roslyn M. ;
O'Donnell, Natalie ;
Naur, Peter ;
Jensen, Kenneth ;
Laursen, Tomas ;
Olsen, Carl Erik ;
Stuart, Peter ;
Hamill, John D. ;
Moller, Birger Lindberg ;
Neale, Alan D. .
PLANT BIOTECHNOLOGY JOURNAL, 2012, 10 (01) :54-66
[7]   Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus [J].
Bommert, Peter ;
Nagasawa, Namiko Satoh ;
Jackson, David .
NATURE GENETICS, 2013, 45 (03) :334-337
[8]   High resolution melting analysis for the detection of EMS induced mutations in wheat SbeIIa genes [J].
Botticella, Ermelinda ;
Sestili, Francesco ;
Hernandez-Lopez, Antonio ;
Phillips, Andrew ;
Lafiandra, Domenico .
BMC PLANT BIOLOGY, 2011, 11
[9]   Analysis of the breadwheat genome using whole-genome shotgun sequencing [J].
Brenchley, Rachel ;
Spannagl, Manuel ;
Pfeifer, Matthias ;
Barker, Gary L. A. ;
D'Amore, Rosalinda ;
Allen, Alexandra M. ;
McKenzie, Neil ;
Kramer, Melissa ;
Kerhornou, Arnaud ;
Bolser, Dan ;
Kay, Suzanne ;
Waite, Darren ;
Trick, Martin ;
Bancroft, Ian ;
Gu, Yong ;
Huo, Naxin ;
Luo, Ming-Cheng ;
Sehgal, Sunish ;
Gill, Bikram ;
Kianian, Sharyar ;
Anderson, Olin ;
Kersey, Paul ;
Dvorak, Jan ;
McCombie, W. Richard ;
Hall, Anthony ;
Mayer, Klaus F. X. ;
Edwards, Keith J. ;
Bevan, Michael W. ;
Hall, Neil .
NATURE, 2012, 491 (7426) :705-710
[10]   A structured mutant population for forward and reverse genetics in Barley (Hordeum vulgare L.) [J].
Caldwell, DG ;
McCallum, N ;
Shaw, P ;
Muehlbauer, GJ ;
Marshall, DF ;
Waugh, R .
PLANT JOURNAL, 2004, 40 (01) :143-150