The Horsfall-Barratt scale and severity estimates of citrus canker

被引:39
作者
Bock, C. H. [1 ]
Gottwald, T. R. [2 ]
Parker, P. E. [3 ]
Cook, A. Z. [3 ]
Ferrandino, F. [4 ]
Parnell, S. [5 ]
van den Bosch, F. [5 ]
机构
[1] Univ Florida, Ft Pierce, FL 34945 USA
[2] USDA ARS USHRL, Ft Pierce, FL 34945 USA
[3] USDA APHIS PPQ, Moore Air Base, Edinburg, TX 78539 USA
[4] Connecticut Agr Expt Stn, Dept Plant Pathol & Ecol, New Haven, CT 06511 USA
[5] Rothamsted Res, Harpenden AL5 2JQ, Herts, England
基金
英国生物技术与生命科学研究理事会;
关键词
Epidemiology; Disease scales; Disease incidence; Infection; Crop loss; Disease management; DISEASE ASSESSMENT; VISUAL ESTIMATION; LEAF-BLIGHT; ACCURACY; SYMPTOMS; RELIABILITY; PRECISION; PROGRAMS; FIELD; SPOT;
D O I
10.1007/s10658-009-9455-x
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Citrus canker assessment data were used to investigate effects of using the Horsfall-Barratt (H-B) scale to estimate disease compared to direct estimation to the nearest percent. Twenty-eight raters assessed each of two-hundred infected leaves (0-38% true diseased area). The data were converted to the H-B scale. Correlation (r) showed that direct estimates had higher inter-rater reliability compared to H-B scaled data (r = 0.75 and 0.71 for direct estimates and H-B scaled data, respectively). Lin's concordance correlation (LCC, rho (c) ) analysis showed individual rater estimates by direct estimation had better agreement with true values compared to H-B scaled data. The direct estimates were more precise compared to H-B scaled data (r = 0.80-0.95 and 0.61-0.90, respectively), but measures of generalised bias or accuracy (C (b) ) were similar for both methods (0.38-1.00). Cumulative mean disease and cumulative variance of the means were calculated for each rater on a leaf-by-leaf basis. Direct estimates were closer to the true severity 59.5% of the time, and to the cumulative true sample mean 53.7% of the time, and to the cumulative true sample mean variance 63.6% of the time. Estimates of mean severity for each leaf based on estimates by 3, 5, 10, 20 and 28 raters were compared to true disease severity. LCC showed that rater-means based on more raters had better agreement with true values compared to individual estimates, but H-B scale data were less precise, although with means based on a parts per thousand yenaEuro parts per thousand 10 raters, agreement was the same for both assessment methods. Magnitude and dispersion of the variance of the means based on H-B scaled data was greater than that by direct estimates. H-B scaling did not improve reliability, accuracy or precision of the estimate of citrus canker severity compared to direct visual estimation.
引用
收藏
页码:23 / 38
页数:16
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