Genetic variation at twentythree microsatellite loci in sixteen human populations

被引:33
作者
Deka, R
Shriver, MD
Yu, LM
Heidreich, EM
Jin, L
Zhong, YX
McGarvey, ST
Agarwal, SS
Bunker, CH
Miki, T
Hundrieser, J
Yin, SJ
Raskin, S
Barrantes, R
Ferrell, RE
Chakraborty, R
机构
[1] Univ Cincinnati, Dept Environm Hlth, Cincinnati, OH 45267 USA
[2] Penn State Univ, Dept Anthropol, University Pk, PA 16802 USA
[3] Univ Pittsburgh, Dept Human Genet, Pittsburgh, PA USA
[4] Brown Univ, Dept Med, Providence, RI 02912 USA
[5] Brown Univ, Int Hlth Inst, Providence, RI 02912 USA
[6] Sanjay Gandhi POstgrad Inst Med Sci, Lucknow, Uttar Pradesh, India
[7] Univ Pittsburgh, Dept Epidemiol, Pittsburgh, PA 15261 USA
[8] Univ Pittsburgh, Dept Epidemiol, Pittsburgh, PA 15261 USA
[9] Ehime Univ, Dept Geriatr Med, Matsuyama, Ehime 790, Japan
[10] Med Hsch Hannover, Abdominal & Transplantat Chirurg Klin, Hannover, Germany
[11] Natl Def Med Ctr, Dept Biochem, Taipei 10764, Taiwan
[12] Univ Fed Parana, BR-80060000 Curitiba, Parana, Brazil
[13] Univ Costa Rica, Inst Invest Salud, San Jose, Costa Rica
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
microsatellite loci; genetic variation; gene diversity; human populations;
D O I
10.1007/BF02924561
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
We have analysed genetic variation at 23 microsatellite loci in a global sample of 16 ethnically and geographically diverse human populations. On the basis of their ancestral heritage and geographic locations, the studied populations can be divided into five major groups, viz. African, Caucasian, Asian Mongoloid, American Indian and Pacific Islander. With respect to the distribution of alleles at the 23 loci, large variability exists among the examined populations. However, with the exception of the American Indians and the Pacific Islanders, populations within a continental group show a greater degree of similarity. Phylogenetic analyses based on allele frequencies at the examined loci show that the first split of the present-day human populations had occurred between the Africans and all of the non-African populations, lending support to an African origin of modern human populations. Gene diversity analyses show that the coefficient of gene diversity estimated from the 23 loci is, in general, larger for populations that have remained isolated and probably of smaller effective sizes, such as the American Indians and the Pacific Islanders. These analyses also demonstrate that the component of total gene diversity, which is attributed to variation between groups of populations, is significantly larger than that among populations within each group. The empirical data presented in this work and their analyses reaffirm that evolutionary histories and the extent of genetic variation among human populations can be studied using microsatellite loci.
引用
收藏
页码:99 / 121
页数:23
相关论文
共 37 条
[1]   An apportionment of human DNA diversity [J].
Barbujani, G ;
Magagni, A ;
Minch, E ;
CavalliSforza, LL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (09) :4516-4519
[2]  
BARRANTES R, 1990, AM J HUM GENET, V46, P63
[3]   HIGH-RESOLUTION OF HUMAN EVOLUTIONARY TREES WITH POLYMORPHIC MICROSATELLITES [J].
BOWCOCK, AM ;
RUIZLINARES, A ;
TOMFOHRDE, J ;
MINCH, E ;
KIDD, JR ;
CAVALLISFORZA, LL .
NATURE, 1994, 368 (6470) :455-457
[4]   Short tandem repeat polymorphism evolution in humans [J].
Calafell, F ;
Shuster, A ;
Speed, WC ;
Kidd, JR ;
Kidd, KK .
EUROPEAN JOURNAL OF HUMAN GENETICS, 1998, 6 (01) :38-49
[5]  
CANN RL, 1987, NATURE, V325, P548
[6]  
CHAKRABORTY R, 1993, HUM BIOL, V65, P875
[7]   Relative mutation rates at di-, tri-, and tetranucleotide microsatellite loci [J].
Chakraborty, R ;
Kimmel, M ;
Stivers, DN ;
Davison, LJ ;
Deka, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (03) :1041-1046
[8]  
Chakraborty R., 1981, Genetics, V96, P721
[9]   INTRA-POPULATION AND INTER-POPULATION DIVERSITY AT SHORT TANDEM REPEAT LOCI IN DIVERSE POPULATIONS OF THE WORLD [J].
DEKA, R ;
SHRIVER, MD ;
YU, LM ;
FERRELL, RE ;
CHAKRABORTY, R .
ELECTROPHORESIS, 1995, 16 (09) :1659-1664
[10]  
DEKA R, 1995, AM J HUM GENET, V56, P461