Application of orthogonal signal correction to minimise the effects of physical and biological variation in high resolution 1H NMR spectra of biofluids

被引:80
作者
Beckwith-Hall, BM [1 ]
Brindle, JT [1 ]
Barton, RH [1 ]
Coen, M [1 ]
Holmes, E [1 ]
Nicholson, JK [1 ]
Antti, H [1 ]
机构
[1] Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England
关键词
D O I
10.1039/b205128c
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
H-1 nuclear magnetic resonance (NMR)-based metabonomics is a well-established technique used to analyse and interpret complex multiparametric metabolic data, and has a wide number of applications in the development of pharmaceuticals. However, interpretation of biological data can be confounded by extraneous variation in the data such as fluctuations in either experimental conditions or in physiological status. Here we have shown the novel application of a data filtering method, orthogonal signal correction (OSC), to biofluid NMR data to minimise the influence of inter- and intra-spectrometer variation during data acquisition, and also to minimise innate physiological variation. The removal of orthogonal variation exposed features of interest in the NMR data and facilitated interpretation of the derived multivariate models. Furthermore, analysis of the orthogonal variation provided an explanation of the systematic analytical/biological changes responsible for confounding the original NMR data.
引用
收藏
页码:1283 / 1288
页数:6
相关论文
共 21 条
  • [1] Study of preprocessing methods for the determination of crystalline phases in binary mixtures of drug substances by X-ray powder diffraction and multivariate calibration
    Artursson, T
    Hagman, A
    Björk, S
    Trygg, J
    Wold, S
    Jacobsson, SP
    [J]. APPLIED SPECTROSCOPY, 2000, 54 (08) : 1222 - 1230
  • [2] Nuclear magnetic resonance spectroscopic and principal components analysis investigations into biochemical effects of three model hepatotoxins
    Beckwith-Hall, BM
    Nicholson, JK
    Nicholls, AW
    Foxall, PJD
    Lindon, JC
    Connor, SC
    Abdi, M
    Connelly, J
    Holmes, E
    [J]. CHEMICAL RESEARCH IN TOXICOLOGY, 1998, 11 (04) : 260 - 272
  • [3] Investigations into biochemical changes due to diurnal variation and estrus cycle in female rats using high-resolution 1H NMR spectroscopy of urine and pattern recognition
    Bollard, ME
    Holmes, E
    Lindon, JC
    Mitchell, SC
    Branstetter, D
    Zhang, W
    Nicholson, JK
    [J]. ANALYTICAL BIOCHEMISTRY, 2001, 295 (02) : 194 - 202
  • [4] Orthogonal signal correction, wavelet analysis, and multivariate calibration of complicated process fluorescence data
    Eriksson, L
    Trygg, J
    Johansson, E
    Bro, R
    Wold, S
    [J]. ANALYTICA CHIMICA ACTA, 2000, 420 (02) : 181 - 195
  • [5] AN AUTOMATIC DATA REDUCTION AND TRANSFER METHOD TO AID PATTERN-RECOGNITION ANALYSIS AND CLASSIFICATION OF NMR-SPECTRA
    FARRANT, RD
    LINDON, JC
    RAHR, E
    SWEATMAN, BC
    [J]. JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS, 1992, 10 (2-3) : 141 - 144
  • [6] Gartland K P, 1990, NMR Biomed, V3, P166, DOI 10.1002/nbm.1940030404
  • [7] GARTLAND KPR, 1989, MOL PHARMACOL, V35, P242
  • [8] An NMR-based metabonomic approach to investigate the biochemical consequences of genetic strain differences:: application to the C57BL10J and Alpk:ApfCD mouse
    Gavaghan, CL
    Holmes, E
    Lenz, E
    Wilson, ID
    Nicholson, JK
    [J]. FEBS LETTERS, 2000, 484 (03) : 169 - 174
  • [9] NMR processing techniques based on multivariate data analysis and orthogonal signal correction.: 13C CP/MAS NMR spectroscopic characterization of softwood kraft pulp
    Hauksson, JB
    Edlund, U
    Trygg, J
    [J]. MAGNETIC RESONANCE IN CHEMISTRY, 2001, 39 (05) : 267 - 275
  • [10] Holmes E, 1998, NMR BIOMED, V11, P235, DOI 10.1002/(SICI)1099-1492(199806/08)11:4/5<235::AID-NBM507>3.0.CO