Conical intersection dynamics in solution:: the chromophore of Green Fluorescent Protein

被引:211
作者
Toniolo, A
Olsen, S
Manohar, L
Martínez, TJ
机构
[1] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[2] Univ Illinois, Beckman Inst, Urbana, IL 61801 USA
[3] Univ Pisa, Dipartimento Chim & Chim Ind, I-56100 Pisa, Italy
[4] Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USA
关键词
D O I
10.1039/b401167h
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We use ab initio results to reparameterize a multi-reference semiempirical method to reproduce the ground and excited state potential energy surfaces (PESs) for the chromophore of Green Fluorescent Protein (GFP). The validity of the new parameter set is tested, and the new method is combined with a quantum mechanical/molecular mechanical (QM/MM) treatment so that it can be applied in the solution phase. Solvent effects on the energetics of the relevant conical intersections are explored. We then combine this representation of the ground and excited state PESs with the full multiple spawning (FMS) nonadiabatic wavepacket dynamics method to simulate the photodynamics of the neutral GFP chromophore in both gas and solution phases. In these calculations, the PESs and their nonadiabatic couplings are evaluated simultaneously with the nuclear dynamics, i.e. "on-the-fly''. The effect of solvation is seen to be quite dramatic, resulting in an order of magnitude decrease in the excited state lifetime. We observe a correlated torsion about a double bond and its adjacent single bond in both gas and solution phases. This is discussed in the context of previous proposals about minimal volume isomerization mechanisms in protein environments.
引用
收藏
页码:149 / 163
页数:15
相关论文
共 114 条
[1]   Chromophores of the green fluorescent protein studied in the gas phase [J].
Andersen, LH ;
Lapierre, A ;
Nielsen, SB ;
Nielsen, IB ;
Pedersen, SU ;
Pedersen, UV ;
Tomita, S .
EUROPEAN PHYSICAL JOURNAL D, 2002, 20 (03) :597-600
[2]   Ab initio molecular dynamics with equation-of-motion coupled-cluster theory: electronic absorption spectrum of ethylene [J].
Baeck, KK ;
Martinez, TJ .
CHEMICAL PHYSICS LETTERS, 2003, 375 (3-4) :299-308
[3]   Quantum control of population transfer in green fluorescent protein by using chirped femtosecond pulses [J].
Bardeen, CJ ;
Yakovlev, VV ;
Squier, JA ;
Wilson, KR .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (50) :13023-13027
[4]   A DIRECT METHOD FOR THE LOCATION OF THE LOWEST ENERGY POINT ON A POTENTIAL SURFACE CROSSING [J].
BEARPARK, MJ ;
ROBB, MA ;
SCHLEGEL, HB .
CHEMICAL PHYSICS LETTERS, 1994, 223 (03) :269-274
[5]   Probing the ground state structure of the green fluorescent protein chromophore using Raman spectroscopy [J].
Bell, AF ;
He, X ;
Wachter, RM ;
Tonge, PJ .
BIOCHEMISTRY, 2000, 39 (15) :4423-4431
[6]   The role of intersection topography in bond selectivity of cis-trans photoisomerization [J].
Ben-Nun, M ;
Molnar, F ;
Schulten, K ;
Martínez, TJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (04) :1769-1773
[7]   Ab initio multiple spawning:: Photochemistry from first principles quantum molecular dynamics [J].
Ben-Nun, M ;
Quenneville, J ;
Martínez, TJ .
JOURNAL OF PHYSICAL CHEMISTRY A, 2000, 104 (22) :5161-5175
[8]   Photodynamics of ethylene:: ab initio studies of conical intersections [J].
Ben-Nun, M ;
Martínez, TJ .
CHEMICAL PHYSICS, 2000, 259 (2-3) :237-248
[9]   Nonadiabatic molecular dynamics: Validation of the multiple spawning method for a multidimensional problem [J].
Ben-Nun, M ;
Martinez, TJ .
JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (17) :7244-7257
[10]   Direct observation of disrotatory ring-opening in photoexcited cyclobutene using ab initio molecular dynamics [J].
Ben-Nun, M ;
Martínez, TJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (26) :6299-6300