An integrated taxonomic study of Fusarium langsethiae, Fusarium poae and Fusarium sporotrichioides based on the use of composite datasets

被引:25
作者
Schmidt, H
Adler, A
Holst-Jensen, A
Klemsdal, SS
Logrieco, A
Mach, RL
Nirenberg, HI
Thrane, U
Torp, M
Vogel, RF
Yli-Mattila, T
Niessen, L
机构
[1] Tech Univ Munich, Lehrstuhl Tech Mikrobiol, D-85350 Freising Weihenstephan, Germany
[2] Bundesamt Agrarbiol, A-4040 Linz, Austria
[3] Natl Vet Inst, Sect Food & Feed Microbiol, N-0033 Oslo, Norway
[4] Norwegian Crop Res Inst, Plant Protect Ctr, N-1432 As, Norway
[5] CNR, Natl Res Council, Inst Sci & Food Nutr, I-70125 Bari, Italy
[6] Vienna Univ Technol, Inst Chem Engn, Microbial Biochem & Gene Technol Grp, A-1060 Vienna, Austria
[7] Fed Biol Res Ctr Agr & Forestry, Inst Plant Virol Microbiol & Biol Safety, D-14195 Berlin, Germany
[8] Tech Univ Denmark, BioCent, DK-2800 Lyngby, Denmark
[9] Turku Univ, Dept Biol, Lab Plant Physiol & Mol Biol, FIN-20014 Turku, Finland
关键词
Fusarium; fungi; polyphasic; taxonomy; numerical; composite dataset;
D O I
10.1016/j.ijfoodmicro.2003.12.012
中图分类号
TS2 [食品工业];
学科分类号
0832 ;
摘要
An integrated systematic study was carried out to clarify the taxonomical position and relationship of Fusarium langsethiae to other taxa within the Fusarium section Sporotrichiella. Strains of this species were compared with strains of the closely related species Fusarium poae and Fusarium sporotrichioides using a composite dataset. This set consisted of DNA sequences derived from the ribosomal internal transcribed spacer (ITS) regions, partial sequences of the ribosomal intergenic spacer (IGS) region, the beta-tubulin and translation elongation factor-1 alpha (EF-1alpha) genes, AFLP fingerprints, chromatographic data on secondary metabolites and morphological data and growth characteristics. From these combined data, a consensus matrix was calculated by taking the mean of all pairwise distances between single isolates over all separate datasets. The consensus matrix was used as the basis for the construction of a UPGMA dendrogram and a multidimensional scaling, both of which revealed a clear separation of the three taxa. Partial IGS, EF-1alpha and beta-tubulin sequence-as well as chromatography-and AFLP-derived similarities turned out to be comparably consistent, while ITS sequence- and morphology-derived similarity matrices were rather divergent. (C) 2004 Elsevier B.V. All rights reserved.
引用
收藏
页码:341 / 349
页数:9
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