Differential multiplicity of MDR alcohol dehydrogenases:: enzyme genes in the human genome versus those in organisms initially studied

被引:22
作者
Nordling, E
Persson, B
Jörnvall, H
机构
[1] Karolinska Inst, Dept Med Biochem & Biophys, S-17177 Stockholm, Sweden
[2] Karolinska Inst, Stockholm Bioinformat Ctr, S-17177 Stockholm, Sweden
关键词
alcohol dehydrogenase; MDR; SDR; enzyme multiplicity; genome; duplicatory event; formaldehyde elimination; alcohol/aldehyde detoxication; dimer/tetramer divergence;
D O I
10.1007/s00018-002-8487-6
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Screens were made for alcohol dehydrogenase (ADH) of the classical type (the MDR superfamily) in translations of human and other relevant genomes, corresponding to the organism types from which the enzyme was initially purified. Considerable multiplicities were detected in the dimeric enzymes from higher eukaryotes: seven forms in the human (plus three pseudogenes), all genes on chromosome 4, in the order class IV --> class 1gamma --> class Ibeta --> class Ialpha --> class V --> class II --> class III, and eight forms in Arabidopsis thaliana (plus one pseudogene). These multiplicity patterns, and the species variability in the animal (human/mouse) and plant (Arabidopsis/pea) lines, suggest parallel but separate duplicatory events, giving rise to three families of dimeric MDR-ADH: class III, the animal non-class III, and the plant non-class III enzymes, with functions in formaldehyde elimination, in alcohol/aldehyde detoxication and in special pathways in higher eukaryotes. Multiplicity, although to a lesser extent, was also noted in tetrameric MDR-ADH, suggesting functional divergence between the dimeric and tetrameric enzymes. Combining these observations, at least five levels of divergence are reflected in the present ADH forms, corresponding to nodes at the SDR/MDR, the dimer/tetramer, the class III/non-class III, the class I/P, and the more recent class splits, each branch associated with separate functional patterns.
引用
收藏
页码:1070 / 1075
页数:6
相关论文
共 32 条
[1]   The genome sequence of Drosophila melanogaster [J].
Adams, MD ;
Celniker, SE ;
Holt, RA ;
Evans, CA ;
Gocayne, JD ;
Amanatides, PG ;
Scherer, SE ;
Li, PW ;
Hoskins, RA ;
Galle, RF ;
George, RA ;
Lewis, SE ;
Richards, S ;
Ashburner, M ;
Henderson, SN ;
Sutton, GG ;
Wortman, JR ;
Yandell, MD ;
Zhang, Q ;
Chen, LX ;
Brandon, RC ;
Rogers, YHC ;
Blazej, RG ;
Champe, M ;
Pfeiffer, BD ;
Wan, KH ;
Doyle, C ;
Baxter, EG ;
Helt, G ;
Nelson, CR ;
Miklos, GLG ;
Abril, JF ;
Agbayani, A ;
An, HJ ;
Andrews-Pfannkoch, C ;
Baldwin, D ;
Ballew, RM ;
Basu, A ;
Baxendale, J ;
Bayraktaroglu, L ;
Beasley, EM ;
Beeson, KY ;
Benos, PV ;
Berman, BP ;
Bhandari, D ;
Bolshakov, S ;
Borkova, D ;
Botchan, MR ;
Bouck, J ;
Brokstein, P .
SCIENCE, 2000, 287 (5461) :2185-2195
[2]   The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 [J].
Bairoch, A ;
Apweiler, R .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :45-48
[3]   The complete genome sequence of Escherichia coli K-12 [J].
Blattner, FR ;
Plunkett, G ;
Bloch, CA ;
Perna, NT ;
Burland, V ;
Riley, M ;
ColladoVides, J ;
Glasner, JD ;
Rode, CK ;
Mayhew, GF ;
Gregor, J ;
Davis, NW ;
Kirkpatrick, HA ;
Goeden, MA ;
Rose, DJ ;
Mau, B ;
Shao, Y .
SCIENCE, 1997, 277 (5331) :1453-+
[4]  
BONNICHSEN RK, 1948, ARCH BIOCHEM, V18, P361
[5]  
Branden C-I., 1975, The Enzymes, V11, P103, DOI DOI 10.1016/S1874-6047(08)60211-5
[6]   Genome sequence of the nematode C-elegans:: A platform for investigating biology [J].
不详 .
SCIENCE, 1998, 282 (5396) :2012-2018
[7]   Ascidian and amphioxus adh genes correlate functional and molecular features of the ADH family expansion during vertebrate evolution [J].
Cañestro, C ;
Albalat, R ;
Hjelmqvist, L ;
Godoy, L ;
Jörnvall, H ;
González-Duarte, R .
JOURNAL OF MOLECULAR EVOLUTION, 2002, 54 (01) :81-89
[8]   A vertebrate aldo-keto reductase active with retinoids and ethanol [J].
Crosas, B ;
Cederlund, E ;
Torres, D ;
Jörnvall, H ;
Farrés, J ;
Parés, X .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (22) :19132-19140
[9]   MOLECULAR GENETIC-ANALYSIS OF HUMAN ALCOHOL-DEHYDROGENASE [J].
DUESTER, G ;
HATFIELD, GW ;
SMITH, M .
ALCOHOL, 1985, 2 (01) :53-56
[10]   Recommended nomenclature for the vertebrate alcohol dehydrogenase gene family [J].
Duester, G ;
Farrés, J ;
Felder, MR ;
Holmes, RS ;
Höög, JO ;
Parés, X ;
Plapp, BV ;
Yin, SJ ;
Jörnvall, H .
BIOCHEMICAL PHARMACOLOGY, 1999, 58 (03) :389-395