SNP genotyping by using photochemical ligation

被引:50
作者
Ogasawara, Shinzi
Fujimoto, Kenzo [1 ]
机构
[1] Japan Adv Inst Sci & Technol, Sch Mat Sci, Ishikawa 9231292, Japan
[2] Japan Sci & Technol Agcy, PRESTO, Kawaguchi 3320012, Japan
关键词
biosensors; DNA recognition; ligation reactions; medicinal chemistry; photochemistry;
D O I
10.1002/anie.200600790
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
(Figure Presented) A chip for single mismatches: Results obtained with a photochemical-ligation-based DNA chip for enhanced discrimination of single-nucleotide polymorphisms (see scheme) show that the reaction takes place over a period of hours, with the 50% stage reached within 10 minutes. A single mismatch in the target sequence yielded extremely little ligated product (a rate 103-fold lower than for the complementary case). © 2006 Wiley-VCH Verlag GmbH & Co. KGaA.
引用
收藏
页码:4512 / 4515
页数:4
相关论文
共 29 条
[1]   Oligonucleotide ligation assay (OLA) for the diagnosis of familial hypercholesterolemia [J].
Baron, H ;
Fung, S ;
Aydin, A ;
Bahring, S ;
Luft, FC ;
Schuster, H .
NATURE BIOTECHNOLOGY, 1996, 14 (10) :1279-1282
[2]   Mutation detection by electrocatalysis at DNA-modified electrodes [J].
Boon, EM ;
Ceres, DM ;
Drummond, TG ;
Hill, MG ;
Barton, JK .
NATURE BIOTECHNOLOGY, 2000, 18 (10) :1096-1100
[3]   Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2 [J].
Favis, R ;
Day, JP ;
Gerry, NP ;
Phelan, C ;
Narod, S ;
Barany, F .
NATURE BIOTECHNOLOGY, 2000, 18 (05) :561-564
[4]   Enzymatic ligation reactions of DNA "words" on surfaces for DNA computing [J].
Frutos, AG ;
Smith, LM ;
Corn, RM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (40) :10277-10282
[5]   Template-directed photoreversible ligation of deoxyoligonucleotides via 5-vinyldeoxyuridine [J].
Fujimoto, K ;
Matsuda, S ;
Takahashi, N ;
Saito, I .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (23) :5646-5647
[6]   Universal DNA microarray method for multiplex detection of low abundance point mutations [J].
Gerry, NP ;
Witowski, NE ;
Day, J ;
Hammer, RP ;
Barany, G ;
Barany, F .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 292 (02) :251-262
[7]   IARC Database of p53 gene mutations in human tumors and cell lines: updated compilation, revised formats and new visualisation tools [J].
Hainaut, P ;
Hernandez, T ;
Robinson, A ;
Rodriguez-Tome, P ;
Flores, T ;
Hollstein, M ;
Harris, CC ;
Montesano, R .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :205-213
[8]   Whole-genome patterns of common DNA variation in three human populations [J].
Hinds, DA ;
Stuve, LL ;
Nilsen, GB ;
Halperin, E ;
Eskin, E ;
Ballinger, DG ;
Frazer, KA ;
Cox, DR .
SCIENCE, 2005, 307 (5712) :1072-1079
[9]   Proofreading genotyping assays and electrochemical detection of SNPs [J].
King, GC ;
Di Giusto, DA ;
Wlassoff, WA ;
Giesebrecht, S ;
Flening, E ;
Tyrelle, GD .
HUMAN MUTATION, 2004, 23 (05) :420-425
[10]  
Li X., 2004, ANGEW CHEM, V116, P4956