Evaluation of the Abbott Investigational Use Only RealTime HIV-1 Assay and Comparison to the Roche Amplicor HIV-1 Monitor Test, Version 1.5

被引:10
作者
Pyne, Michael T. [1 ]
Konnick, Eric Q. [1 ]
Phansalkar, Amit [1 ]
Hillyard, David R. [1 ,2 ]
机构
[1] ARUP Inst Clin & Expt Pathol, Salt Lake City, UT 84108 USA
[2] Univ Utah, Dept Pathol, Salt Lake City, UT USA
关键词
HEPATITIS-C VIRUS; GENETICALLY DIVERSE PANEL; VIRAL LOAD; COBAS-TAQMAN; GROUP-O; RNA; QUANTIFICATION; QUANTITATION; PERFORMANCE; SPECIMENS;
D O I
10.2353/jmoldx.2009.080166
中图分类号
R36 [病理学];
学科分类号
100104 ;
摘要
Abbott Molecular's m2000 system and RealTime HIV-1 assay (RealTime) were evaluated for sensitivity, reproducibility, linearity, ability to detect diverse HIV-1 subtypes/groups, and correlation to the Roche AMPLICOR HIV-1 MONITOR Test, Version 1.5 (Amplicor). The limit of detection was determined using the second international World Health Organization Standard and Viral Quality Assurance standard material. Serial dilutions of four patient samples were used to determine inter- and intra-assay reproducibility and linearity. Samples representing HIV-1 groups M, N, and 0 were evaluated in the RealTime, Amplicor, and Siemens Versant HIV-1 branched chain DNA 3.0 (Versant) assays. Archived Amplicor-tested samples were tested with the 1 ml, 0.5 ml, and 0.6 ml versions of the RealTime assay. Probit analysis predicts a limit of detection of 21.94 IU/ml using the World Health Organization Standard and 26-54 copies/ml using Viral Quality Assurance material with the 1 ml assay. Linearity and reproducibility were very good between similar to 1.60 to 6.0 log(10) copies/ml. All three assays produced similar measurements for all Group M subtypes tested; the RealTime assay was the only assay that detected all three Group O samples tested. Correlation with the Amplicor assay was good, although the RealTime assay measured between 0.342 and 0.716 log(10) copies/ml lower on average, depending on the input volume. The automated RealTime assay exhibits excellent sensitivity, dynamic range, reproducibility, and group/subtype detection, albeit with consistently lower values than Amplicor. (J Mol Diagn 2009, 11:347-354; DOI. 10.2353/jmoldx.2009.080166)
引用
收藏
页码:347 / 354
页数:8
相关论文
共 21 条
[1]   Comparison of LCx with other current viral load assays for detecting and quantifying human immunodeficiency virus type 1 RNA in patients infected with the circulating recombinant form A/G (CRF02) [J].
Amendola, A ;
Bordi, L ;
Angeletti, C ;
Girardi, E ;
Ippolito, G ;
Capobianchi, MR .
JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (02) :811-815
[2]   HIV screening for all: The new standard of care [J].
Armstrong, Wendy S. ;
Taege, Alan J. .
CLEVELAND CLINIC JOURNAL OF MEDICINE, 2007, 74 (04) :297-301
[3]   Comparison of four commercial quantitative HIV-1 assays for viral load monitoring in clinical daily routine [J].
Braun, Patrick ;
Ehret, Robert ;
Wiesmann, Frank ;
Zabbal, Frauke ;
Knickmann, Mechthild ;
Kuehn, Rainer ;
Thamm, Sven ;
Warnat, Gerald ;
Knechten, Heribert .
CLINICAL CHEMISTRY AND LABORATORY MEDICINE, 2007, 45 (01) :93-99
[4]   Impaired quantification of plasma HIV-1 RNA with a commercialized real-time PCR assay in a couple of HIV-1-infected individuals [J].
Colson, P. ;
Solas, C. ;
Moreau, J. ;
Motte, A. ;
Henry, M. ;
Tamalet, C. .
JOURNAL OF CLINICAL VIROLOGY, 2007, 39 (03) :226-229
[5]   HIV-1 viral load assays for resource-limited settings [J].
Fiscus, Susan A. ;
Cheng, Ben ;
Crowe, Suzanne M. ;
Demeter, Lisa ;
Jennings, Cheryl ;
Miller, Veronica ;
Respess, Richard ;
Stevens, Wendy .
PLOS MEDICINE, 2006, 3 (10) :1743-1750
[6]   Comparison of the LCx human immunodeficiency virus (HIV) RNA quantitative, RealTime HIV, and COBAS AmpliPrep-COBAS TaqMan assays for quantitation of HIV type 1 RNA in plasma [J].
Foulongne, Vincent ;
Montes, Brigitte ;
Didelot-Rousseau, Marie-Noelle ;
Segondy, Michel .
JOURNAL OF CLINICAL MICROBIOLOGY, 2006, 44 (08) :2963-2966
[7]   Failure to detect a non-B HIV-1 subtype by the HIV-1 Amplicor Monitor test, version 1.5: a case of unexpected vertical transmission [J].
Geelen, S ;
Lange, J ;
Borleffs, A ;
Wolfs, T ;
Weersink, A ;
Schuurman, R .
AIDS, 2003, 17 (05) :781-782
[8]   Evaluation of the Roche Cobas TaqMan and Abbott RealTime extraction-quantification systems for HIV-1 subtypes [J].
Gueudin, Marie ;
Plantier, Jean Christophe ;
Lemee, Veronique ;
Schmitt, Marie Paule ;
Chartier, Loic ;
Bourlet, Thomas ;
Ruffault, Annick ;
Damond, Florence ;
Vray, Muriel ;
Simon, Francois .
JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES, 2007, 44 (05) :500-505
[9]   Real-time PCR assays for hepatitis C virus (HCV) RNA quantitation are adequate for clinical management of patients with chronic HCV infection [J].
Halfon, Philippe ;
Bourliere, Marc ;
Penaranda, Guillaume ;
Khiri, Hacene ;
Ouzan, Denis .
JOURNAL OF CLINICAL MICROBIOLOGY, 2006, 44 (07) :2507-2511
[10]   Thermodynamically modulated partially double-stranded linear DNA probe design for homogeneous real-time PCR [J].
Huang, Shihai ;
Salituro, John ;
Tang, Ning ;
Luk, Ka-Cheung ;
Hackett, John, Jr. ;
Swanson, Priscilla ;
Cloherty, Gavin ;
Mak, Wai-Bing ;
Robinson, John ;
Abravaya, Klara .
NUCLEIC ACIDS RESEARCH, 2007, 35 (16)