Dead-box proteins: a family affair - active and passive players in RNP-remodeling

被引:364
作者
Linder, Patrick [1 ]
机构
[1] CMU, Dept Microbiol & Mol Med, CH-1211 Geneva 4, Switzerland
关键词
D O I
10.1093/nar/gkl468
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
DEAD-box proteins are characterized by nine conserved motifs. According to these criteria, several hundreds of these proteins can be identified in databases. Many different DEAD-box proteins can be found in eukaryotes, whereas prokaryotes have small numbers of different DEAD-box proteins. DEAD-box proteins play important roles in RNA metabolism, and they are very specific and cannot mutually be replaced. In vitro, many DEAD-box proteins have been shown to have RNA-dependent ATPase and ATP-dependent RNA helicase activities. From the genetic and biochemical data obtained mainly in yeast, it has become clear that these proteins play important roles in remodeling RNP complexes in a temporally controlled fashion. Here, I shall give a general overview of the DEAD-box protein family.
引用
收藏
页码:4168 / 4180
页数:13
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共 197 条
[1]   The human DDX and DHX gene families of putative RNA helicases [J].
Abdelhaleem, M ;
Maltais, L ;
Wain, H .
GENOMICS, 2003, 81 (06) :618-622
[2]   A tumour-associated DEAD-box protein, rck/p54 exhibits RNA unwinding activity toward c-myc RNAs in vitro [J].
Akao, Y ;
Yoshida, H ;
Matsumoto, K ;
Matsui, T ;
Hogetu, K ;
Tanaka, N ;
Usukura, J .
GENES TO CELLS, 2003, 8 (08) :671-676
[3]  
AKAO Y, 1992, CANCER RES, V52, P6083
[4]   Nucleolar proteome dynamics [J].
Andersen, JS ;
Lam, YW ;
Leung, AKL ;
Ong, SE ;
Lyon, CE ;
Lamond, AI ;
Mann, M .
NATURE, 2005, 433 (7021) :77-83
[5]   The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex [J].
Anderson, JSJ ;
Parker, R .
EMBO JOURNAL, 1998, 17 (05) :1497-1506
[6]   Prp43: An RNA helicase-like factor involved in spliceosome disassembly [J].
Arenas, JE ;
Abelson, JN .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (22) :11798-11802
[7]   The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity [J].
Ballut, L ;
Marchadier, B ;
Baguet, A ;
Tomasetto, C ;
Séraphin, B ;
Le Hir, H .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2005, 12 (10) :861-869
[8]   Identification of a 60S preribosomal particle that is closely linked to nuclear export [J].
Bassler, J ;
Grandi, P ;
Gadal, O ;
Lessmann, T ;
Petfalski, E ;
Tollervey, D ;
Lechner, J ;
Hurt, E .
MOLECULAR CELL, 2001, 8 (03) :517-529
[9]   Comprehensive mutational analysis of yeast DEXD/H box RNA helicases involved in large ribosomal subunit biogenesis [J].
Bernstein, KA ;
Granneman, S ;
Lee, AV ;
Manickam, S ;
Baserga, SJ .
MOLECULAR AND CELLULAR BIOLOGY, 2006, 26 (04) :1195-1208
[10]   Dynamics and processivity of 40S ribosome scanning on mRNA in yeast [J].
Berthelot, K ;
Muldoon, M ;
Rajkowitsch, L ;
Hughes, J ;
McCarthy, JEG .
MOLECULAR MICROBIOLOGY, 2004, 51 (04) :987-1001