NETGEN: generating phylogenetic networks with diploid hybrids

被引：14

作者：

Morin, M. M. ^{[1
]}

Moret, B. M. E. ^{[1
]}

机构：

[1] Univ New Mexico, Dept Comp Sci, Albuquerque, NM 87131 USA

来源：

BIOINFORMATICS | 2006年 / 22卷 / 15期

基金：

美国国家科学基金会;

关键词：

D O I：

10.1093/bioinformatics/btl191

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

NetGen is an event-driven simulator that creates phylogenetic networks by extending the birth-death model to include diploid hybridizations. DNA sequences are evolved in conjunction with the topology, enabling hybridization decisions to be based on contemporary evolutionary distances. NetGen supports variable rate lineages, root sequence specification, outgroup generation and many other options. This note describes the NetGen application and proposes an extension of the Newick format to accommodate phylogenetic networks.

引用

页码：1921 / 1923

页数：3

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