The first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula

被引:96
作者
Nelson, Matthew N.
Phan, Huyen T. T.
Ellwood, Simon R. [1 ]
Moolhuijzen, Paula M.
Hane, James
Williams, Angela
O'Lone, Clare E.
Fosu-Nyarko, John
Scobie, Marie
Cakir, Mehmet
Jones, Michael G. K.
Bellgard, Matthew
Ksiazkiewicz, Michal
Wolko, Bogdan
Barker, Susan J.
Oliver, Richard P.
Cowling, Wallace A.
机构
[1] Murdoch Univ, Div Hlth Sci, WA State Agr Biotechnol Ctr, Australian Ctr Necrotroph Fungal Pathogens, Perth, WA 6150, Australia
[2] Univ Western Australia, Sch Plant Biol, Fac Nat & Agr Sci, Perth, WA 6009, Australia
[3] Murdoch Univ, Ctr Bioinformat & Biol Comp, Murdoch, WA 6150, Australia
[4] Murdoch Univ, Div Sci & Engn, Sch Biol Sci & Biotechnol, WA State Agr Biotechnol Ctr, Murdoch, WA 6150, Australia
[5] Polish Acad Sci, Inst Plant Genet, PL-60479 Poznan, Poland
关键词
D O I
10.1007/s00122-006-0288-0
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
We report the first gene-based linkage map of Lupinus angustifolius (narrow-leafed lupin) and its comparison to the partially sequenced genome of Medicago truncatula. The map comprises 382 loci in 20 major linkage groups, two triplets, three pairs and 11 unlinked loci and is 1,846 cM in length. The map was generated from the segregation of 163 RFLP markers, 135 gene-based PCR markers, 75 AFLP and 4 AFLP-derived SCAR markers in a mapping population of 93 recombinant inbred lines, derived from a cross between domesticated and wild-type parents. This enabled the mapping of five major genes controlling key domestication traits in L. angustifolius. Using marker sequence data, the L. angustifolius genetic map was compared to the partially completed M. truncatula genome sequence. We found evidence of conserved synteny in some regions of the genome despite the wide evolutionary distance between these legume species. We also found new evidence of widespread duplication within the L. angustifolius genome.
引用
收藏
页码:225 / 238
页数:14
相关论文
共 45 条
[1]  
Atkins Craig A., 1998, P67
[2]   NUCLEAR-DNA AMOUNTS IN ANGIOSPERMS [J].
BENNETT, MD ;
SMITH, JB ;
HESLOPHARRISON, JS .
PROCEEDINGS OF THE ROYAL SOCIETY SERIES B-BIOLOGICAL SCIENCES, 1982, 216 (1203) :179-199
[3]  
Bhardwaj H. L., 2002, Trends in new crops and new uses. Proceedings of the Fifth National Symposium, Atlanta, Georgia, USA, 10-13 November, 2001, P115
[4]  
Boersma JG, 2005, CELL MOL BIOL LETT, V10, P331
[5]  
Brien SJ, 1999, LUPIN ANCIENT CROP N, P115
[6]   Intercropping of corn with soybean, lupin and forages: Silage yield and quality [J].
Carruthers, K ;
Prithiviraj, B ;
Fe, Q ;
Cloutier, D ;
Martin, RC ;
Smith, DL .
JOURNAL OF AGRONOMY AND CROP SCIENCE, 2000, 185 (03) :177-185
[7]   Estimating genome conservation between crop and model legume species [J].
Choi, HK ;
Mun, JH ;
Kim, DJ ;
Zhu, HY ;
Baek, JM ;
Mudge, J ;
Roe, B ;
Ellis, N ;
Doyle, J ;
Kiss, GB ;
Young, ND ;
Cook, DR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (43) :15289-15294
[8]   A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M-sativa [J].
Choi, HK ;
Kim, D ;
Uhm, T ;
Limpens, E ;
Lim, H ;
Mun, JH ;
Kalo, P ;
Penmetsa, RV ;
Seres, A ;
Kulikova, O ;
Roe, BA ;
Bisseling, T ;
Kiss, GB ;
Cook, DR .
GENETICS, 2004, 166 (03) :1463-1502
[9]  
COWING WA, 1998, LUPINS CROP PLANTS B, P93
[10]  
COWLING WA, 1999, B AGR W AUSTR, V4365