Gene Transfer and Diversification of Microbial Eukaryotes

被引:96
作者
Andersson, Jan O. [1 ]
机构
[1] Uppsala Univ, Dept Evolut Genom & Systemat, S-75236 Uppsala, Sweden
基金
瑞典研究理事会;
关键词
protist; algae; comparative genomics; adaptation; gene acquisition; horizontal gene transfer; HORIZONTAL TRANSFER; LATERAL TRANSFER; NUCLEAR GENOMES; BACTERIAL GENES; PLANT-PATHOGENS; EVOLUTION; ORIGIN; ENDOSYMBIOSIS; ACQUISITION; DICTYOSTELIUM;
D O I
10.1146/annurev.micro.091208.073203
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The importance of lateral gene transfer in genome evolution of microbial eukaryotes is slowly being appreciated. Acquisitions of genes have led to metabolic adaptation in diverse eukaryotic lineages. In most cases the metabolic genes have originated from prokaryotes, often followed by sequential transfers between eukaryotes. However, the knowledge of gene transfer in eukaryotes is still mainly based on anecdotal evidence. Some of the observed patterns may be biases in experimental approaches and sequence databases rather than evolutionary trends. Rigorous systematic studies of gene acquisitions that allow for the possibility of exchanges of all categories of genes from all sources are needed to get a more objective view of gene transfer in eukaryote evolution. It it-lay be that the role of gene transfer in the diversification process of microbial eukaryotes currently is underestimated.
引用
收藏
页码:177 / 193
页数:17
相关论文
共 86 条
[1]   Comparative genomics and the evolution of prokaryotes [J].
Abby, Sophie ;
Daubin, Vincent .
TRENDS IN MICROBIOLOGY, 2007, 15 (03) :135-141
[2]   The new higher level classification of eukaryotes with emphasis on the taxonomy of protists [J].
Adl, SM ;
Simpson, AGB ;
Farmer, MA ;
Andersen, RA ;
Anderson, OR ;
Barta, JR ;
Bowser, SS ;
Brugerolle, G ;
Fensome, RA ;
Fredericq, S ;
James, TY ;
Karpov, S ;
Kugrens, P ;
Krug, J ;
Lane, CE ;
Lewis, LA ;
Lodge, J ;
Lynn, DH ;
Mann, DG ;
McCourt, RM ;
Mendoza, L ;
Moestrup, O ;
Mozley-Standridge, SE ;
Nerad, TA ;
Shearer, CA ;
Smirnov, AV ;
Spiegel, FW ;
Taylor, MFJR .
JOURNAL OF EUKARYOTIC MICROBIOLOGY, 2005, 52 (05) :399-451
[3]   A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution [J].
Andersson, Jan O. ;
Sjogren, Asa M. ;
Horner, David S. ;
Murphy, Colleen A. ;
Dyal, Patricia L. ;
Svard, Staffan G. ;
Logsdon, John M., Jr. ;
Ragan, Mark A. ;
Hirt, Robert P. ;
Roger, Andrew J. .
BMC GENOMICS, 2007, 8 (1)
[4]   Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes [J].
Andersson, Jan O. ;
Hirt, Robert P. ;
Foster, Peter G. ;
Roger, Andrew J. .
BMC EVOLUTIONARY BIOLOGY, 2006, 6
[5]  
Andersson Jan O., 2008, P109
[6]   Evolutionary genomics:: Is Buchnera a bacterium or an organelle? [J].
Andersson, JO .
CURRENT BIOLOGY, 2000, 10 (23) :R866-R868
[7]   Lateral gene transfer in eukaryotes [J].
Andersson, JO .
CELLULAR AND MOLECULAR LIFE SCIENCES, 2005, 62 (11) :1182-1197
[8]   Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes [J].
Andersson, JO ;
Sjögren, ÅM ;
Davis, LAM ;
Embley, TM ;
Roger, AJ .
CURRENT BIOLOGY, 2003, 13 (02) :94-104
[9]   Dihydroorotate dehydrogenase arises from novel fused gene product with aspartate carbamoyltransferase in Bodo saliens [J].
Annoura, Takeshi ;
Sariego, Idalia ;
Nara, Takeshi ;
Makiuchi, Takashi ;
Fujimura, Tsutomu ;
Taka, Hikari ;
Mineki, Reiko ;
Murayama, Kimie ;
Aoki, Takashi .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2007, 358 (01) :253-258
[10]   The genome of the diatom Thalassiosira pseudonana:: Ecology, evolution, and metabolism [J].
Armbrust, EV ;
Berges, JA ;
Bowler, C ;
Green, BR ;
Martinez, D ;
Putnam, NH ;
Zhou, SG ;
Allen, AE ;
Apt, KE ;
Bechner, M ;
Brzezinski, MA ;
Chaal, BK ;
Chiovitti, A ;
Davis, AK ;
Demarest, MS ;
Detter, JC ;
Glavina, T ;
Goodstein, D ;
Hadi, MZ ;
Hellsten, U ;
Hildebrand, M ;
Jenkins, BD ;
Jurka, J ;
Kapitonov, VV ;
Kröger, N ;
Lau, WWY ;
Lane, TW ;
Larimer, FW ;
Lippmeier, JC ;
Lucas, S ;
Medina, M ;
Montsant, A ;
Obornik, M ;
Parker, MS ;
Palenik, B ;
Pazour, GJ ;
Richardson, PM ;
Rynearson, TA ;
Saito, MA ;
Schwartz, DC ;
Thamatrakoln, K ;
Valentin, K ;
Vardi, A ;
Wilkerson, FP ;
Rokhsar, DS .
SCIENCE, 2004, 306 (5693) :79-86