The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities

被引：297

作者：

Chen, I-Min A. ^{[1
]}

Chu, Ken ^{[1
]}

Palaniappan, Krishnaveni ^{[1
]}

Ratner, Anna ^{[1
]}

Huang, Jinghua ^{[1
]}

Huntemann, Marcel ^{[1
]}

Hajek, Patrick ^{[1
]}

Ritter, Stephan ^{[1
]}

Varghese, Neha ^{[1
]}

Seshadri, Rekha ^{[1
]}

Roux, Simon ^{[1
]}

Woyke, Tanja ^{[1
]}

Eloe-Fadrosh, Emiley A. ^{[1
]}

Ivanova, Natalia N. ^{[1
]}

Kyrpides, Nikos C. ^{[1
]}

机构：

[1] Lawrence Berkeley Natl Lab, Dept Energy Joint Genome Inst, 1 Cyclotron Rd, Berkeley, CA 94720 USA

来源：

NUCLEIC ACIDS RESEARCH | 2021年 / 49卷 / D1期

关键词：

PATHWAYS; GENOMES;

D O I：

10.1093/nar/gkaa939

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The Integrated Microbial Genomes & Microbiomes system (IMG/M: https:// img.jgi.doe.gov/m/) contains annotated isolate genome and metagenome datasets sequenced at the DOE's Joint Genome Institute (JGI), submitted by external users, or imported from public sources such as NCBI. IMG v 6.0 includes advanced search functions and a new tool for statistical analysis of mixed sets of genomes and metagenome bins. The new IMG web user interface also has a new Help page with additional documentation and webinar tutorials to help users better understand how to use various IMG functions and tools for their research. New datasets have been processed with the prokaryotic annotation pipeline v.5, which includes extended protein family assignments.

引用

页码：D751 / D763

页数：13

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