Emerging evidence for functional peptides encoded by short open reading frames

被引:415
作者
Andrews, Shea J. [1 ]
Rothnagel, Joseph A. [1 ]
机构
[1] Univ Queensland, Sch Chem & Mol Biosci, St Lucia, Qld 4072, Australia
基金
英国医学研究理事会;
关键词
LONG NONCODING RNAS; MESSENGER-RNA; TRANSLATIONAL REGULATION; 5'-UNTRANSLATED REGIONS; GENE STRUCTURE; TRANSCRIPTIONAL ACTIVITY; PROVIDES EVIDENCE; SMALL PROTEINS; HUMAN GENOME; IDENTIFICATION;
D O I
10.1038/nrg3520
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Short open reading frames (sORFs) are a common feature of all genomes, but their coding potential has mostly been disregarded, partly because of the difficulty in determining whether these sequences are translated. Recent innovations in computing, proteomics and high-throughput analyses of translation start sites have begun to address this challenge and have identified hundreds of putative coding sORFs. The translation of some of these has been confirmed, although the contribution of their peptide products to cellular functions remains largely unknown. This Review examines this hitherto overlooked component of the proteome and considers potential roles for sORF-encoded peptides.
引用
收藏
页码:193 / 204
页数:12
相关论文
共 121 条
  • [1] Translational repression of the McKusick-Kaufman syndrome transcript by unique upstream open reading frames encoding mitochondrial proteins with alternative polyadenylation sites
    Akimoto, Chizuru
    Sakashita, Eiji
    Kasashima, Katsumi
    Kuroiwa, Kenji
    Tominaga, Kaoru
    Hamamoto, Toshiro
    Endo, Hitoshi
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 2013, 1830 (03): : 2728 - 2738
  • [2] Translational regulation of Arabidopsis XIPOTL1 is modulated by phosphocholine levels via the phylogenetically conserved upstream open reading frame 30
    Alatorre-Cobos, Fulgencio
    Cruz-Ramirez, Alfredo
    Hayden, Celine A.
    Perez-Torres, Claudia-Anahi
    Chauvin, Anne-Laure
    Ibarra-Laclette, Enrique
    Alva-Cortes, Erika
    Jorgensen, Richard A.
    Herrera-Estrella, Luis
    [J]. JOURNAL OF EXPERIMENTAL BOTANY, 2012, 63 (14) : 5203 - 5221
  • [3] Almansour NM, 2012, FUTURE MED CHEM, V4, P1553, DOI [10.4155/FMC.12.98, 10.4155/fmc.12.98]
  • [4] [Anonymous], P NATL ACAD SCI
  • [5] [Anonymous], PLANT CELL
  • [6] CRITICA: Coding region identification tool invoking comparative analysis
    Badger, JH
    Olsen, GJ
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (04) : 512 - 524
  • [7] Long noncoding RNAs are rarely translated in two human cell lines
    Banfai, Balazs
    Jia, Hui
    Khatun, Jainab
    Wood, Emily
    Risk, Brian
    Gundling, William E., Jr.
    Kundaje, Anshul
    Gunawardena, Harsha P.
    Yu, Yanbao
    Xie, Ling
    Krajewski, Krzysztof
    Strahl, Brian D.
    Chen, Xian
    Bickel, Peter
    Giddings, Morgan C.
    Brown, James B.
    Lipovich, Leonard
    [J]. GENOME RESEARCH, 2012, 22 (09) : 1646 - 1657
  • [8] Small open reading frames: Beautiful needles in the haystack
    Basrai, MA
    Hieter, P
    Boeke, JD
    [J]. GENOME RESEARCH, 1997, 7 (08): : 768 - 771
  • [9] Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]
  • [10] An Out-of-frame Overlapping Reading Frame in the Ataxin-1 Coding Sequence Encodes a Novel Ataxin-1 Interacting Protein
    Bergeron, Danny
    Lapointe, Catherine
    Bissonnette, Cyntia
    Tremblay, Guillaume
    Motard, Julie
    Roucou, Xavier
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2013, 288 (30) : 21824 - 21835