A grid-based Bader analysis algorithm without lattice bias

被引:6918
作者
Tang, W. [1 ]
Sanville, E. [2 ]
Henkelman, G. [1 ]
机构
[1] Univ Texas Austin, Dept Chem & Biochem, Austin, TX 78712 USA
[2] Univ Loughborough, Dept Math Sci, Loughborough LE11 3TU, Leics, England
基金
美国国家科学基金会;
关键词
ATOMIC CHARGES; PSEUDOPOTENTIALS; INTEGRATE; SURFACES; BASINS; POINTS;
D O I
10.1088/0953-8984/21/8/084204
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
A computational method for partitioning a charge density grid into Bader volumes is presented which is efficient, robust, and scales linearly with the number of grid points. The partitioning algorithm follows the steepest ascent paths along the charge density gradient from grid point to grid point until a charge density maximum is reached. In this paper, we describe how accurate off-lattice ascent paths can be represented with respect to the grid points. This improvement maintains the efficient linear scaling of an earlier version of the algorithm, and eliminates a tendency for the Bader surfaces to be aligned along the grid directions. As the algorithm assigns grid points to charge density maxima, subsequent paths are terminated when they reach previously assigned grid points. It is this grid-based approach which gives the algorithm its efficiency, and allows for the analysis of the large grids generated from plane-wave-based density functional theory calculations.
引用
收藏
页数:7
相关论文
共 26 条
[1]   DISTRIBUTED POLARIZABILITIES USING THE TOPOLOGICAL THEORY OF ATOMS IN MOLECULES [J].
ANGYAN, JG ;
JANSEN, G ;
LOOS, M ;
HATTIG, C ;
HESS, BA .
CHEMICAL PHYSICS LETTERS, 1994, 219 (3-4) :267-273
[2]  
[Anonymous], 1998, MORPHY98
[3]  
Arnaldsen A., BADER CHARGE ANAL
[4]   ATOMS IN MOLECULES [J].
BADER, RFW .
ACCOUNTS OF CHEMICAL RESEARCH, 1985, 18 (01) :9-15
[5]   CALCULATION OF THE AVERAGE PROPERTIES OF ATOMS IN MOLECULES .2. [J].
BIEGLERKONIG, FW ;
BADER, RFW ;
TANG, TH .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1982, 3 (03) :317-328
[6]   Atomic charges, dipole moments, and Fukui functions using the Hirshfeld partitioning of the electron density [J].
De Proft, F ;
Van Alsenoy, C ;
Peeters, A ;
Langenaeker, W ;
Geerlings, P .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2002, 23 (12) :1198-1209
[7]   A fast and robust algorithm for Bader decomposition of charge density [J].
Henkelman, Graeme ;
Arnaldsson, Andri ;
Jonsson, Hannes .
COMPUTATIONAL MATERIALS SCIENCE, 2006, 36 (03) :354-360
[8]   Numerical computation of critical properties and atomic basins from three-dimensional grid electron densities [J].
Katan, C ;
Rabiller, P ;
Lecomte, C ;
Guezo, M ;
Oison, V ;
Souhassou, M .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2003, 36 :65-73
[9]  
KONIG FWB, 2001, J COMPUT CHEM, V36, P65
[10]   Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set [J].
Kresse, G ;
Furthmuller, J .
PHYSICAL REVIEW B, 1996, 54 (16) :11169-11186