A subspace time-domain algorithm for automated NMR spectral normalization

被引:15
作者
Lemmerling, P
Vanhamme, L
Romano, R
Van Huffel, S
机构
[1] Katholieke Univ Leuven, Dept Elect Engn, SCD SISTA, B-3001 Louvain, Belgium
[2] Univ Naples Federico II, Dipartimento Sci Fis, Ist Nazl Fis Mat, Unita Napoli,Complesso Univ Monte S Angelo, I-80126 Naples, Italy
关键词
NMR; algorithm; normalization; subspace methods;
D O I
10.1006/jmre.2002.2598
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Recently, two methods have been proposed for quantitatively comparing NMR spectra of control and treated samples, in order to examine the possible occurring variations in cell metabolism and/or structure in response to numerous physical, chemical, and biological agents. These methods are the maximum superposition normalization algorithm (MaSNAl) and the minimum rank normalization algorithm (MiRaNAl). In this paper a new subspace-based time-domain normalization algorithm, denoted by SuTdNAl (subspace time-domain normalization algorithm), is presented. By the determination of the intersection of the column spaces of two Hankel matrices, the common signal poles and further on the components having proportionally varying amplitudes are detected. The method has the advantage that it is computationally less intensive than the MaSNAl and the MiRaNAl. Furthermore, no approximate estimate of the normalization factor is required. The algorithm was tested by Monte Carlo simulations on a set of simulation signals. It was shown that the SuTdNAl has a statistical performance similar to that of the MiRaNAl, which itself is an improvement over the MaSNAl. Furthermore, two samples of known contents are compared with the MiRaNAl, the SuTdNAl, and an older method using a standard. Finally, the SuTdNAl is tested on a realistic simulation example derived from an in vitro measurement on cells. (C) 2002 Elsevier Science (USA).
引用
收藏
页码:190 / 199
页数:10
相关论文
共 13 条
[1]  
BACHELARD H, 1993, J NEUROCHEM, V61, P412
[2]   H-1 AND P-31 NMR AND HPLC STUDIES OF MOUSE L1210 LEUKEMIA-CELL EXTRACTS - THE EFFECT OF AU(I) AND CU(I) DIPHOSPHINE COMPLEXES ON THE CELL-METABOLISM [J].
BERNERSPRICE, SJ ;
SANT, ME ;
CHRISTOPHERSON, RI ;
KUCHEL, PW .
MAGNETIC RESONANCE IN MEDICINE, 1991, 18 (01) :142-158
[3]   H-1-NMR DETECTION OF CEREBRAL MYOINOSITOL [J].
CERDAN, S ;
PARRILLA, R ;
SANTORO, J ;
RICO, M .
FEBS LETTERS, 1985, 187 (01) :167-172
[4]   Parameter estimation with prior knowledge of known signal poles for the quantification of NMR spectroscopy data in the time domain [J].
Chen, H ;
VanHuffel, S ;
VanOrmondt, D ;
DeBeer, R .
JOURNAL OF MAGNETIC RESONANCE SERIES A, 1996, 119 (02) :225-234
[5]   Improved methods for exponential parameter estimation in the presence of known poles and noise [J].
Chen, H ;
VanHuffel, S ;
Vandewalle, J .
IEEE TRANSACTIONS ON SIGNAL PROCESSING, 1997, 45 (05) :1390-1393
[6]  
DEROME AE, 1996, MODERN NMR TECHNIQUE
[7]  
REMY C, 1994, J NEUROCHEM, V62, P166
[8]  
ROBIN A, 1998, INVIVO NMR SPECTROSC
[9]   A new algorithm for NMR spectral normalization [J].
Romano, R ;
Lamanna, R ;
Santini, MT ;
Indovina, PL .
JOURNAL OF MAGNETIC RESONANCE, 1999, 138 (01) :115-122
[10]  
ROMANO R, 2000, J MAGN RESON, V146